GTTGCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGA
TCCGCGGAATTCATTCCAGTTCTCTTGGAGATGCTGGTTGCATGATATAT
ATTCTCCAACCTCTTCTTCAAACCTAATTGTGCGCTTGAATCTTATAGAG
GTCTCTTATAGATAACATCATTGGATTTTGCTTTTTTACTCAGTCCTACT
GTCTCTGCTCTTCAAGAAGGGTATTTAGTCCAATCACATTTAATGTAATT
GGTTTGTTCCTGCCATTTTCACTGTCATTTCTATTTGTTTCTTAAATTCT
TCTGATCCTTATATACTGCCTCCTTTAGAGCTAAAATATTTCTAGTGTAT
TACTATCAGTCTATTTCTTCGAAAAACATTTTGTTGAATATAACACAGGG
GCACAGGTCACAGTGTGCATGTGGAAGTCCGAAGATAGCTAAGGGGTTCT
CTCTTTTCACTTTTGCATATGTTCCAAGGATGAATCTTAGGTCCCCAAGC
TTAGCAGCAAGAACCTTTACCTGATAAGCCACCTCACTGGCCCCCTGTTT
CTTTCCCTTTTTACTGCATTTTGCTTAGATATTTTACTACTGATTGTATA
AGAAATTTCAGTGTCTTCCTAACTCATCACAGTCTACTCCAGAATAATAT
TGACTTAATGTGATTAAAATACACAAGCATTTCTCGACTGAGTCCTGCTA
ACCTCCTCTTTCTCTGCTATGTATTTG

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGACCATTGTCTGACCGGAGGGAGGC
TGGGATTCCAAATTGAGGGATGATCTCACGGAAAAGGAGATCAGAGACTG
TCTGATCCCTTTTGCTGGTGGTGGGGAATGCTTCCACCCACCCTGAGAAG
GTGTCCATCAAGACCAGGAGGTCCTTGGCATATTTAACAGTAGGCATGTG
GGTAAAGTCCCAGAGTTGGGGATCTATTGTGGGGGTCCACCTGGGTGGCT
GGCAAAGGAAATGGCGTGTTAGAGCCAGTAGATTGGGTAGCTAGGAAGAA
GAGAGGGGCTACTGGTGAGCTTTAGTTCAGGCAAAAAGGAGGAGCAAAAG
AAATAAAGGCTCCCACTTTGGCTAGAAGATCTCTTCCGATAAGGGGACAG
GACACACTGGCCCTACAAGAAAAGAATGCATGAGAGAAGCACCCCTAAAA
ACTCGGTTGACTGGTATGATCTGGTAAGGTTGGCAAAGTTGTACCCCTAC
CCCAACAGTAGGGAAATTAAAAGGAAAGGTGGATCCCCCAAACTCTGTCA
GGACTCAGTAAGTGGCCCCATTGTCCAAAAGGAAGGAGATGTGTCTCCCC
GATACCGTGATGACTATCCAGGGCTTCCTGTTAGTGATGGTAGTGGTTGG
TTCAAGGAAGCTCAGGCTCCCTCAGGCCTAAGGGATCAGCTGGAGGGCAA
TCTAGGA

Query= MSMg01no486_o15.b1 MSMg01no486_o15.b1 CHROMAT_FILE:
MSMg01no486_o15.b1 PHD_FILE: MSMg01no486_o15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:21 2005
         (675 letters)



>mm_chr11_44406768_44407842
          Length = 1075

 Score =  994 bits (514), Expect = 0.0
 Identities = 563/582 (96%), Gaps = 7/582 (1%)
 Strand = Plus / Minus

                                                                        
Query: 101  ctcttatagataacatcattggattttgc-ttttttactcagtcctactgtctctgctct 159
            ||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||
Sbjct: 1075 ctcttatagataacatcattggattttgctttttttactcagccctaccgtctctgctct 1016

                                                                        
Query: 160  tcaagaagggtatttagtccaatcacatttaatgtaattggtttgttcctgccattttca 219
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1015 tcaagaagggtatttagtccaatcacatttaatgtaattggtttgttcctgccattgtca 956

                                                                        
Query: 220  ctgtcatttctatttgtttcttaaattcttctgatccttatatactgcctcctttagagc 279
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955  atgtcatttctatttgtttcttaaattcttctgatccttatatactgcctcctttagagc 896

                                                                        
Query: 280  taaaatatttctagtgtattactatc---agtctatttcttcgaaaaacattttgttgaa 336
            ||||||||||| | ||| ||||||||   |||||||||||||||||||||||||||||||
Sbjct: 895  taaaatatttccaatgtgttactatcattagtctatttcttcgaaaaacattttgttgaa 836

                                                                        
Query: 337  tataacacaggggcacaggtcacagtgtgcatgtggaagtccgaagatagctaaggggtt 396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 835  tataacacaggggcacaggtcacagtgtgcatgtggaagtccgaagatagctaagtggtt 776

                                                                        
Query: 397  ctctcttttcacttttgcatatgttccaaggatgaatcttaggtccccaagcttagcagc 456
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775  ctctcttttcacttttgcatatgttccaaggatgaatcttaggtccccaagcttagcagc 716

                                                                        
Query: 457  aagaacctttacctgataagccacctcactggccccctgtttctttccctttttactgca 516
            |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 715  aagaacctttacctgataagccacctcattggtcccctgtttctttccctttttactgca 656

                                                                        
Query: 517  ttttgcttagatattttactactgattgtataagaaatttcagtgtcttcctaactcatc 576
            ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 655  ttttgtttagatattttactactgattgtataagaaatttcagtatcttcctaactcatc 596

                                                                        
Query: 577  acagtctactccagaataatattgacttaatgtgattaaaatacacaagcatttctcgac 636
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595  acagtctactccagaataatattgacttaatgtgattaaaatacacaagcatttctcgac 536

                                                      
Query: 637  tgagtcctgctaacctcctctttct---ctgctatgtatttg 675
            |||||||||||||||||||||||||   ||||||||||||||
Sbjct: 535  tgagtcctgctaacctcctctttctctgctgctatgtatttg 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)