NTTTCTTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCAGCAATCTTTCCAACATCTTGTATGTCTGGATGCTG
CCACATTTCCCATCGTGATGGTAATGGACTAAACCTCTAAAAGTGTAAGC
CAGCCCCAATTAAATGTTATCCTTTATAAAAGTTGCCTTGGTCATGGTGT
GTCTCCACAGCAACAAAACTCTAATACAGCTTCTTTACTCTTGCTCTAAT
TGAAGCTTTCCATGCCACCTCCACCATGTGGCAGCTTGACCTTCATGGGC
CTGATCTCCATGTTGGCTTAAATATCATTAATGTTTTTTCCCCTTCTCTT
TTCTATTCTCCCCTGGGCAAATACTGAGAATACAGCTTGCCCTTTCTGAG
CTATTAATTTTAAATGCTAGAAAAAAATAGTTTCAAACTGTTTGAACCCA
TTCTTGAATTCTTTTATTAATGAGACTAAGAGCCCAAAAGGAAGATCTTG
ATTACCCTAGTATCTTGACACTTAGCAACCCAGATGGGATCCCTCCTCAA
AAATCCAGTAACAGCATCTTTACAATTCATAGTTAACATGAAGGAAAATC
CAGAAGATATGGTCAGAGAGTTGAACTAGTCTTTTCCTGAAGGGAAGCCA
TCTGCCCCTCAGGTTTCCTCTGTTGTCTCTATTCCCAGAAGGTTGCCTTT
ATCCTCAGCAAAGAGAGTTTGTTACACAGTTAAAAACTTGATAGTCAT

NNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACTGGAG
GATACAGCAATACCTCTCCTGGGCATTTATCCAGAAGATGCCCCAACTGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATAGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTG
ATAAGTGGATATTAGCCCCAAACCTAGGATTCCCAAGATATAAGGTACAA
TTTGCTAAACACATGAAACTCAAGAAGATGAAGAACTGGAAGTGTGGACA
CTATGCCCCTCCCTTAA

Query= MSMg01no487_d06.b1 MSMg01no487_d06.b1 CHROMAT_FILE:
MSMg01no487_d06.b1 PHD_FILE: MSMg01no487_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:44 2005
         (659 letters)



>mm_chr11_12565051_12566109
          Length = 1059

 Score = 1220 bits (631), Expect = 0.0
 Identities = 649/655 (99%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattctcagcaatctttccaacatcttgtatgtctggatgctgccacatttcccatcgt 64
            ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1027 gaattctcagcaacctttccaacatcttgtatgtctggatgctgccacatttcccatcat 968

                                                                        
Query: 65   gatggtaatggactaaacctctaaaagtgtaagccagccccaattaaatgttatccttta 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967  gatggtaatggactaaacctctaaaagtgtaagccagccccaattaaatgttatccttta 908

                                                                        
Query: 125  taaaagttgccttggtcatggtgtgtctccacagcaacaaaactctaatacagcttcttt 184
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 907  taaaagttgccttggtcatggtgtgtctccacagcaacaaaaccctaatacagcttcttt 848

                                                                        
Query: 185  actcttgctctaattgaagctttccatgccacctccaccatgtggcagcttgaccttcat 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847  actcttgctctaattgaagctttccatgccacctccaccatgtggcagcttgaccttcat 788

                                                                        
Query: 245  gggcctgatctccatgttggcttaaatatcattaatgttttttccccttctcttttctat 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787  gggcctgatctccatgttggcttaaatatcattaatgttttttccccttctcttttctat 728

                                                                        
Query: 305  tctcccctgggcaaatactgagaatacagcttgccctttctgagctattaattttaaatg 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727  tctcccctgggcaaatactgagaatacagcttgccctttctgagctattaattttaaatg 668

                                                                        
Query: 365  ctagaaaaaaatagtttcaaactgtttgaacccattcttgaattcttttattaatgagac 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667  ctagaaaaaaatagtttcaaactgtttgaacccattcttgaattcttttattaatgagac 608

                                                                        
Query: 425  taagagcccaaaaggaagatcttgattaccctagtatcttgacacttagcaacccagatg 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607  taagagcccaaaaggaagatcttgattaccctagtatcttgacacttagcaacccagatg 548

                                                                        
Query: 485  ggatccctcctcaaaaatccagtaacagcatctttacaattcatagttaacatgaaggaa 544
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 547  ggatccctcctcaaaaatccagtagcagcatctttacaattcatagttaacatgaaggaa 488

                                                                        
Query: 545  aatccagaagatatggtcagagagttgaactagtcttttcctgaagggaagccatctgcc 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 487  aatccagaagatatggtcagagagttgaactagtcttttcctgaagggaagccgtctgcc 428

                                                                   
Query: 605  cctcaggtttcctctgttgtctctattcccagaaggttgcctttatcctcagcaa 659
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 427  cctcaggtttcctctgttgtctctattcccagcaggttgcctttatcctcagcaa 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)