Query= MSMg01no487_e11.b1 MSMg01no487_e11.b1 CHROMAT_FILE:
MSMg01no487_e11.b1 PHD_FILE: MSMg01no487_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:51 2005
(577 letters)
>mm_chr11_3684312_3685288
Length = 977
Score = 1015 bits (525), Expect = 0.0
Identities = 553/565 (97%), Gaps = 6/565 (1%)
Strand = Plus / Minus
Query: 1 gtgggattaaatttgaaatatgtgtatctatgttatagtatgtatgcatacgtgtatata 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 gtgggattaaatctgaaatatgtgtatctatgttatagtatgtatgcatacgtgtatata 901
Query: 61 tgtgcctacatgtgcatgtgcatgtgtgtgca--tgtgtgcatgcatcccctggtactgg 118
||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||
Sbjct: 900 tgtgcctacatgtgcgtgtgca----tgtgcatgtgtgtgcatgcatcccctggtactgg 845
Query: 119 aatttcaaacgattgagactcaccatataggtgctggaagaacagccagtgctcttaacc 178
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 aatttcaaatgattgagactcaccatataggtgctggaagaacagccagtgctcttaacc 785
Query: 179 gctgagccatctctccagcccttgataagcttgtcagatgctgtactgcctggggaagga 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 actgagccatctctccagcccttgataagcttgtcagatgctgtactgcctggggaagga 725
Query: 239 actgatcttgtagcctagctgtcaaagctgcctgcagaccactcagatgtccatacacaa 298
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 actgaacttgtagcctagctgtcaaagctgcctgcagaccactcagatgtccatacacaa 665
Query: 299 gtctgcattcatgctttgtgttaagtcctctctggagattcattacccattgcttttagg 358
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 664 gtctgcattcatgctttgtgttaagtcctctctggagattcattagccattgcttttagg 605
Query: 359 catgacatttccaaccggcttgccccagtgcagagtcccacaaatagagacttgttggat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 catgacatttccaaccggcttgccccagtgcagagtcccacaaatagagacttgttggat 545
Query: 419 ggaatgtgaaatgctctccagccaattaccgttggctggcaatgtgttttatgaagctgc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ggaatgtgaaatgctctccagccaattaccgttggctggcaatgtgttttatgaagctgc 485
Query: 479 aagttgattggtggctgtgtggttttcagtttgtcttcttgtgtgctgggtagaagttaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aagttgattggtggctgtgtggttttcagtttgtcttcttgtgtgctgggtagaagttaa 425
Query: 539 cagtctgaggacagaagcctgggtg 563
|||||||||||||||||||||||||
Sbjct: 424 cagtctgaggacagaagcctgggtg 400
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_e11.g1 MSMg01no487_e11.g1 CHROMAT_FILE:
MSMg01no487_e11.g1 PHD_FILE: MSMg01no487_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:51 2005
(627 letters)
>mm_chr11_3544725_3545751
Length = 1027
Score = 1195 bits (618), Expect = 0.0
Identities = 624/626 (99%)
Strand = Plus / Plus
Query: 2 ggaattcaaaatgccttggttttgatcccaatgggtcagaatatctgctttgtcatttag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcaaaatgccttggttttgatcccaatgggtcagaatatctgctttgtcatttag 261
Query: 62 tagacagctacagattttgaagtaggaaaagaacaagagtccagtggccttgacaggatc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tagacagctacagattttgaagtaggaaaagaacaagagtccagtggccttgacaggatc 321
Query: 122 ctaggcagtttatgaaacttcaatcatttgagattgtggagtagggtccaatgctgttct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctaggcagtttatgaaacttcaatcatttgagattgtggagtagggtccaatgctgttct 381
Query: 182 cagagatgcctttcttcagacagtgttgacaatataaacaaaacaaaatcccctggtcca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cagagatgcctttcttcagacagtgttgacaatataaacaaaacaaaatcccctggtcca 441
Query: 242 aatttattatgtgtctctgaagaataaactgcagaaatgaactgtacatttatggaataa 301
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aatttactatgtgtctctgaagaataaactgcagaaatgaactgtacatttatggaataa 501
Query: 302 acctggcctttgttgtgataaaatagcttcagttatttggcttgaagactcttgactgca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 acctggcctttgttgtgataaaatagcttcagttatttggcttgaagactcttgactgca 561
Query: 362 ctataaagggctgtgctgaatctgggcagagtaggacaggagtggaggtaaaggccacat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctataaagggctgtgctgaatctgggcagagtaggacaggagtggaggtaaaggccacat 621
Query: 422 catgatggctgaatgcttcttgggtcacagtggtccactggaatggtgtcttcttcagta 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 catgatggctgaatgcttcttgggtcacagtggtccactggaatggtgtcttcttcagta 681
Query: 482 gtaaggtggtaggaatcaccatggacaaaaatccaagtaccaggtctgtaggctgatgga 541
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gtaaggtggaaggaatcaccatggacaaaaatccaagtaccaggtctgtaggctgatgga 741
Query: 542 gtagcagaaggaaggtcattggcaggtccaggtgaacattcagcaatcaggaggcacggg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gtagcagaaggaaggtcattggcaggtccaggtgaacattcagcaatcaggaggcacggg 801
Query: 602 actagaaggggcagggaaaaaacagg 627
||||||||||||||||||||||||||
Sbjct: 802 actagaaggggcagggaaaaaacagg 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
