BAC Information

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BAC

Clone NameMSMg01-488B08
Chromosome11 (Build37)
Map Location 94,149,574 - 94,338,433
singlet/doubletdoublet
Overlap gene3300001P08Rik, Ankrd40, Abcc3, Cacna1g
Upstream geneCar10, LOC629636, Utp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2
Downstream geneSpata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488B08.T7 (MSMg01no488_b08.b1)MSMg01-488B08.TJ (MSMg01no488_b08.g1)
ACCAG566892AG566893
length670731
length of high quality
(start - end)		621 (47 - 667)369 (323 - 691)
definitionCHROMAT_FILE: MSMg01no488_b08.b1 PHD_FILE: MSMg01no488_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:53 2005CHROMAT_FILE: MSMg01no488_b08.g1 PHD_FILE: MSMg01no488_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,149,574 - 94,150,194)(94,338,066 - 94,338,433)
sequence
AGCACAATCAAGAGAGGAGCCGCGGAATTCCACGGTGCAGATGGGTCACG
CTAGTTATCCACACAAATGCTGGTGGGATCCGCCCAGGGTTTTGCTGGTT
TGGGTTTTCTCTTCTTCATTACACAAGATGACATTAAGATATTTGTTCAT
CCTTCTCCTGGCAGCATGTAAGAGTTTTTCGAGTATGTACCTAGGGCTGA
CACTTAACTGTGCTGAACTGTTTCCAAAGTTGCCCCTAAACAAACCTGTT
GACAGATAACTGATCTACTTGAGATGGCCGAGGGAAAGATTTTTTTTAAC
TGTGAAACTCGGGAAATGCATGTTAATAGAAAATCCATCATTCTGACACA
TGAAAATGCCATTTACCCTGTTTCAGCTTACTTGAAATGTACTTTTTAAA
AGCAACACTTTCAACTTCAAAGCACTGTGTCCTCTATCTCAAGATAAATG
TTTCCAAATATGGTAACTGAAAATGGCAAATTCAGGACATATATGATGGA
CACCATCATATATAAAGAAATCTATATTCCCACCATATATAAAAAGACAT
TTTATATCCCCACCTCCCACTTCCTGCCCCCTTCCCTAGTACTTGGAAGA
AAGAATAGGCAACATCAGGATCTTGATCCTGGATCTAGCAAGGAGCAGAC
AATCAGTGGTAAGGGAAGAA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCCTCCAAGGAATTCTCCCAGGAAGGCTGGGCTTTCCAACT
TATAGGCTGAACATGATCCTTACTGGATATGGAGTTGATTTTAAAATCCC
ACAATGTCTCTTCCTCTTGGCAAGTGCCACTTTACCCTCCTCTTCTATGC
CCCCTCTTCTGTCAGCAGGACCGTATTGGGGCAGCTAGGGCTTAGGGTCA
CAATGCTCATAGCTTCTTGATTTGGGAGGTATTTATCATTTCGTTTCCCT
GAACTCTAGATTCCTTATTTGAGAAATGGCAGTTTCAATACCCAGAGATA
TGGGGTGACCAAATGGAATGGTTGCAGCACCCCAAGTAAAGAGCACCACA
GATGGGTGATCTATTTTGTTCTTAAGGGGACCAGCACGGGAGGGACAAAG
GCCACAAAGCTGCAGGGTCCTGGAGGGGCTTGCTAAGCAAGGCACATATG
AGATACTCTAGCAAACTTGGAAGAAAGTTTGGACCACATAGGTCTAACTT
GGTGGATAAACAGAGGCACAAATAAAGGATTTTCCCCTCCATCTCCCACT
TCCTGGTTTGAAATACTTTTTTTTTTTTTAACCAAGTGCCCACTATGTAT
CAAACACTAGGCTAGGACATGCCACAGGGAACACAGCATAAGGAGAGAGA
GAGAGAGGGAGAGAGAGAGAGAGAGAGAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_b08.b1 MSMg01no488_b08.b1 CHROMAT_FILE:
MSMg01no488_b08.b1 PHD_FILE: MSMg01no488_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:53 2005
         (621 letters)



>mm_chr11_94149374_94150394
          Length = 1021

 Score = 1139 bits (589), Expect = 0.0
 Identities = 613/621 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacgctagttatccacacaaatgctggtgggatccgcccagggttttgctggtttgggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacgctagttatccacacaaatgctggtgggatccgcccagggttttgctggtttgggtt 260

                                                                       
Query: 61  ttctcttcttcattacacaagatgacattaagatatttgttcatccttctcctggcagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctcttcttcattacacaagatgacattaagatatttgttcatccttctcctggcagca 320

                                                                       
Query: 121 tgtaagagtttttcgagtatgtacctagggctgacacttaactgtgctgaactgtttcca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tgtaagagtttttcgagtatgtacctagggctgacacttaactgtgctgaaccgtttcca 380

                                                                       
Query: 181 aagttgcccctaaacaaacctgttgacagataactgatctacttgagatggccgagggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagttgcccctaaacaaacctgttgacagataactgatctacttgagatggccgagggaa 440

                                                                       
Query: 241 agattttttttaactgtgaaactcgggaaatgcatgttaatagaaaatccatcattctga 300
           |||  |   | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaatagatcaactgtgaaactcgggaaatgcatgttaatagaaaatccatcattctga 500

                                                                       
Query: 301 cacatgaaaatgccatttaccctgtttcagcttacttgaaatgtactttttaaaagcaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacatgaaaatgccatttaccctgtttcagcttacttgaaatgtactttttaaaagcaac 560

                                                                       
Query: 361 actttcaacttcaaagcactgtgtcctctatctcaagataaatgtttccaaatatggtaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actttcaacttcaaagcactgtgtcctctatctcaagataaatgtttccaaatatggtaa 620

                                                                       
Query: 421 ctgaaaatggcaaattcaggacatatatgatggacaccatcatatataaagaaatctata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgaaaatggcaaattcaggacatatatgatggacaccatcatatataaagaaatctata 680

                                                                       
Query: 481 ttcccaccatatataaaaagacattttatatccccacctcccacttcctgcccccttccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcccaccatatataaaaagacattttatatccccacctcccacttcctgcccccttccc 740

                                                                       
Query: 541 tagtacttggaagaaagaataggcaacatcaggatcttgatcctggatctagcaaggagc 600
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggtacttggaagaaagaataggcaacatcaggatcttgatcctggatctagcaaggagc 800

                                
Query: 601 agacaatcagtggtaagggaa 621
           |||||||||||||||||||||
Sbjct: 801 agacaatcagtggtaagggaa 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no488_b08.g1 MSMg01no488_b08.g1 CHROMAT_FILE:
MSMg01no488_b08.g1 PHD_FILE: MSMg01no488_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:53 2005
         (369 letters)



>mm_chr11_94337866_94338634
          Length = 769

 Score =  704 bits (364), Expect = 0.0
 Identities = 367/368 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaatggcagtttcaatacccagagatatggggtgaccaaatggaatggttgcagcaccc 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gaaatggcagtttcaatgcccagagatatggggtgaccaaatggaatggttgcagcaccc 509

                                                                       
Query: 61  caagtaaagagcaccacagatgggtgatctattttgttcttaaggggaccagcacgggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 caagtaaagagcaccacagatgggtgatctattttgttcttaaggggaccagcacgggag 449

                                                                       
Query: 121 ggacaaaggccacaaagctgcagggtcctggaggggcttgctaagcaaggcacatatgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ggacaaaggccacaaagctgcagggtcctggaggggcttgctaagcaaggcacatatgag 389

                                                                       
Query: 181 atactctagcaaacttggaagaaagtttggaccacataggtctaacttggtggataaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atactctagcaaacttggaagaaagtttggaccacataggtctaacttggtggataaaca 329

                                                                       
Query: 241 gaggcacaaataaaggattttcccctccatctcccacttcctggtttgaaatactttttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gaggcacaaataaaggattttcccctccatctcccacttcctggtttgaaatactttttt 269

                                                                       
Query: 301 tttttttaaccaagtgcccactatgtatcaaacactaggctaggacatgccacagggaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tttttttaaccaagtgcccactatgtatcaaacactaggctaggacatgccacagggaac 209

                   
Query: 361 acagcata 368
           ||||||||
Sbjct: 208 acagcata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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