Query= MSMg01no488_f09.b1 MSMg01no488_f09.b1 CHROMAT_FILE:
MSMg01no488_f09.b1 PHD_FILE: MSMg01no488_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:13 2005
(657 letters)
>mm_chr11_49219596_49220653
Length = 1058
Score = 290 bits (150), Expect = 2e-82
Identities = 294/348 (84%), Gaps = 17/348 (4%)
Strand = Plus / Plus
Query: 4 ggaattcaattcaattctattccagtt-agagctgtttaggtcatttcagttcagagcag 62
||||||||||||||||| ||| ||||| | ||| |||||| ||| |||| |||||||
Sbjct: 204 ggaattcaattcaattccatt-cagttcaaagcagtttagctcagttcaattcagag--- 259
Query: 63 tccagttcagttcaggtttgttcagtccggtccagtccagtccagtccagtt-----cag 117
||||||||||||||| ||||||||| | ||||| || |||||||||||| |||
Sbjct: 260 --cagttcagttcaggtcagttcagtccagcccagttcaatccagtccagtttaatccag 317
Query: 118 tccagttcagttcagactcaggaaattctcaat-agaataaggacatcaaattttgcttc 176
|||||| |||||||| || |||||||||||||| | |||||||||| |||||||||||||
Sbjct: 318 tccagtccagttcaggcttaggaaattctcaatca-aataaggacaccaaattttgcttc 376
Query: 177 taaacatgatacattgtcctagatttcttagtctttccacttctccttttgcttagaatt 236
|||| |||||||||||| | ||||||||||| |||||||| | |||| ||||| ||||||
Sbjct: 377 taaatatgatacattgttcgagatttcttaggctttccacctgtcctattgctaagaatt 436
Query: 237 cagagttgctaatgttggagttatgttccaaaagaggaaatg-tagtagaaaatatgccc 295
||||||||||||||||||||||||||||||||||||||||| |||||| || ||| ||
Sbjct: 437 cagagttgctaatgttggagttatgttccaaaagaggaaataatagtagcaaccatgtcc 496
Query: 296 ctcccagatctcctgtatagatcccaccagtatagtgtttg--tttac 341
||| || | ||||||| |||||| | |||| ||||||||| |||||
Sbjct: 497 ctctcaaacctcctgtgcagatcctagcagtctagtgtttgggtttac 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1058
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1048
Effective search space: 678056
Effective search space used: 678056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_f09.g1 MSMg01no488_f09.g1 CHROMAT_FILE:
MSMg01no488_f09.g1 PHD_FILE: MSMg01no488_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:13 2005
(614 letters)
>mm_chr16_61232605_61233618
Length = 1014
Score = 1156 bits (598), Expect = 0.0
Identities = 610/614 (99%)
Strand = Plus / Plus
Query: 1 tattaattcttacaaaggctcatttcacctgtgtaaaattttttttgttttgcatgaaat 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tattaattcttacaaaggctcatttcacctgtgtaaatttttttttgttttgcatgaaat 260
Query: 61 tgtttctaaatgaaaaaatttttttaaagcactgtagaaaatatgtgataaccttgaatg 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtttctaaatgaaaaaaaaattttaaagcactgtagaaaatatgtgataaccttgaatg 320
Query: 121 tctgtcacacggtttctgctgctatttatagcagcaaaaaaactacaaagcttcttaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgtcacacggtttctgctgctatttatagcagcaaaaaaactacaaagcttcttaaac 380
Query: 181 tcaataagaaatttaattagattttgtcatcaataatttaggtttcaaattgtagtaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaataagaaatttaattagattttgtcatcaataatttaggtttcaaattgtagtaaat 440
Query: 241 tggcagctggtgatgtgaactgcaaatgaaatcaggccaattctaaccaaatcaggcata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggcagctggtgatgtgaactgcaaatgaaatcaggccaattctaaccaaatcaggcata 500
Query: 301 aaattatattttaataaactttgattctgcttcctattacccctttcttcttatcaagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaattatattttaataaactttgattctgcttcctattacccctttcttcttatcaagca 560
Query: 361 tgcctgagatccaagtgtgatttgtatccacagatgttgggctttattgctctggtaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcctgagatccaagtgtgatttgtatccacagatgttgggctttattgctctggtaatt 620
Query: 421 tagaaatatgactggaaaaagagattctattagtatacagccaaaaaagtctaacaaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagaaatatgactggaaaaagagattctattagtatacagccaaaaaagtctaacaaact 680
Query: 481 tttttaaagactgtgatggaaataagatgaaataaatagtctatgttttctttttttaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttttaaagactgtgatggaaataagatgaaataaatagtctatgttttctttttttaac 740
Query: 541 taagtttttccatttccttaagtgctgtgaactgaacctagagtgtcatacattctagcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taagtttttccatttccttaagtgctgtgaactgaacctagagtgtcatacattctagcc 800
Query: 601 cactgatctgcatt 614
||||||||||||||
Sbjct: 801 cactgatctgcatt 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
