Query= MSMg01no488_g03.b1 MSMg01no488_g03.b1 CHROMAT_FILE:
MSMg01no488_g03.b1 PHD_FILE: MSMg01no488_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:17 2005
(686 letters)
>mm_chr11_49196052_49197135
Length = 1084
Score = 833 bits (431), Expect = 0.0
Identities = 617/693 (89%), Gaps = 28/693 (4%)
Strand = Plus / Plus
Query: 19 gcaagagtgttaaattcatacactggcatttgggaatagataattaatgtatatgtggtg 78
|||||||| |||| ||||||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct: 201 gcaagagtattaagttcatacactgacatttgggattagataattcatgtatatgtggtg 260
Query: 79 gtgatggtaagctttgtgcattgtaaaagacacagcaccactcctggtctctacacacaa 138
|||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||
Sbjct: 261 gtgatggtaagctttgtgcattataaaagacacagcaccattcctggcctctacacacaa 320
Query: 139 cagaaatatttgtacatgtgggaaaatcttccagaatgaatgacttcatctctgattgag 198
|||||||||||||||||||| |||| ||||||||| ||| ||| ||||||||||||||||
Sbjct: 321 cagaaatatttgtacatgtgagaaagtcttccagagtgactgatttcatctctgattgag 380
Query: 199 aaatgctattgtagatggagtggcatgtagagtgtgctcacagaaaatgtcagtgtagag 258
|||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 381 aaatgctattatagatggagtggcatgtagggtgtgctcttagaaaatgtcagtgtagag 440
Query: 259 gctgatgactaattttctggtccagtggccagcatagcttagaagtgcttcactgagatg 318
|||||||||||||||||||||||| |||||| ||| ||| | ||||| ||| ||||||||
Sbjct: 441 gctgatgactaattttctggtccattggccaacattgctgaaaagtgtttccctgagatg 500
Query: 319 a----cacaagagtataagcagttgaatttcatttt----ctt---------aataacca 361
| |||||||| ||||||||||| ||||| |||| ||| ||||||
Sbjct: 501 aagcacacaagagaataagcagttggatttctttttttttctttctttttttaataactg 560
Query: 362 gaaagaatgagtttcatgttggacatgctgaagttcaggag-tcttcctagtgaatgtga 420
|||||||||||||||||||||||||||||||||| ||| || |||||| |||||| || |
Sbjct: 561 gaaagaatgagtttcatgttggacatgctgaagtccag-aggtcttccaagtgaaagtaa 619
Query: 421 caggcaaagagatggcaactaacacagagtctttgttaaattaatggtcaagagaggccc 480
||||||| || ||| |||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 620 caggcaaggacatgtcaactaacacagagtctttgttaatttaatggtcaagagagaccc 679
Query: 481 tttttaaacgacatagctgtaatttatcagtaactcattattcacagttctcaaaaggaa 540
| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctgttaag-gagatagctgtaatttatcagtaactcattattcacagttctcaaaaggaa 738
Query: 541 gaggcctggtgtctgtggctccacagagtgatgtgccagagtttgataggaag------- 593
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaggcctggtgtctgtggctccacagagtgatgtgccagagtttgataggaagaaaggaa 798
Query: 594 -ttgagaggacatgcagacgaaagccacagaccacgaggcagtgtataaaccttagatac 652
|||||||| |||||||| |||||||||||||| ||| ||| |||||||||||||||||
Sbjct: 799 gttgagaggggatgcagacaaaagccacagaccatgagacagggtataaaccttagatac 858
Query: 653 tgtagttttgaataatttcagcatcatttatga 685
|||||||||||||||||||||||||||||||||
Sbjct: 859 tgtagttttgaataatttcagcatcatttatga 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1084
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1074
Effective search space: 726024
Effective search space used: 726024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_g03.g1 MSMg01no488_g03.g1 CHROMAT_FILE:
MSMg01no488_g03.g1 PHD_FILE: MSMg01no488_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:17 2005
(600 letters)
>mm_chr11_49215152_49216151
Length = 1000
Score = 826 bits (427), Expect = 0.0
Identities = 454/463 (98%), Gaps = 1/463 (0%)
Strand = Plus / Minus
Query: 138 tggtctttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttcattag 197
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 tggtctttttgtcttactgacggtgtcttttgccttgcagaaactttggagtttcattag 941
Query: 198 gtcccatttgtcaattctcgatctttcaacacaagccattgctgttctgttcaggaattt 257
|| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 940 gt-ccatttgtcaattctcgatcttacagtacaagccattgctgttctgttcaggaattt 882
Query: 258 ttcccctgtgcccatatcttcaaggcttttccccactttctcttctataagtttcagtgt 317
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 881 tttccctgtgcccatatcttcaaggcttttccccactttctcctctataagtttcagtgt 822
Query: 318 ctctggttttatgtgaagttcgtgtgctggtacttttaaattgactcaatttattatttt 377
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ttctggttttatgtgaagttcgtgtgctggtacttttaaattgactcaatttattatttt 762
Query: 378 ttatcttcagattaatttattaccctggcattatttattagatgtgcagtcttctacaat 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ttatcttcagattaatttattaccctggcattatttattagatgtgcagtcttctacaat 702
Query: 438 gattgatttttatcatatttcaaatttcaatataagtataattggttctctttttgtgcc 497
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gattgatttttaccatatttcaaatttcaatataagtataattggttctctttttgtgcc 642
Query: 498 attctgtaatctaccatctatccctatgttaacaagactattattgtagatctacgtaat 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 attctgtaatctaccatctatccctatgttaacaagactattattgtagatctacgtaat 582
Query: 558 actgtccaattttgtgacccaactttccaaatatttttccaaa 600
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 actgtccaattttgtgacccaactttccaaatatttttccaaa 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
