Query= MSMg01no488_k20.b1 MSMg01no488_k20.b1 CHROMAT_FILE:
MSMg01no488_k20.b1 PHD_FILE: MSMg01no488_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:40 2005
(597 letters)
>mm_chr11_41091483_41092479
Length = 997
Score = 1007 bits (521), Expect = 0.0
Identities = 581/602 (96%), Gaps = 10/602 (1%)
Strand = Plus / Plus
Query: 1 acctcagcatatctctgtcattttgattttgatttttgattgtctttgtattgtcctgat 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 acctcagcatatctctgtcattttgattttgatttt-gattgtctttgtattgtcctgat 259
Query: 61 ttcatacattatttagcaatgtatttcactggtcacaagaacttttctgttcttccgtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttcatacattatttagcaatgtatttcactggtcacaagaacttttctgttcttccgtcc 319
Query: 121 tgggtgttgtctttggtcatgtgtgtcatttcactactgatctagaggtaggcctgtggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgggtgttgtctttggtcatgtgtgtcatttcactactgatctagaggtaggcctgtggc 379
Query: 181 ttaagaacatacttgtctttgaagaagcattccaaaggttagtgcaggcagtagttattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttaagaacatacttgtctttgaagaagcattccaaaggttagtgcaggcagtagttattc 439
Query: 241 nctaatgggtagaaaattgtgtata--ggtctctgggtctaaaaaaaacccaaagaaaaa 298
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 440 tctaatgggtagaaaattgtgtatataggtctctgggtctaaaaaaa-cccaaagaaaaa 498
Query: 299 aacatcatataaaaatcattcaggagcc-tggtgccaccttgcccctgaactcagcagat 357
|||||||||||||||||||||||||||| || ||||||| || | ||||||||||||||
Sbjct: 499 aacatcatataaaaatcattcaggagccctg-tgccaccgtgggcgtgaactcagcagat 557
Query: 358 ggtcccaagttcctaagaggactttccatgctacaggcgacctagcac-acccgggatct 416
|||||||||||||| ||||||||||||||||||||||||||||||| | |||| ||||||
Sbjct: 558 ggtcccaagttcctcagaggactttccatgctacaggcgacctagc-ctacccaggatct 616
Query: 417 tagcatcactgaggagagtctg-cctccagagagggctctgactctgggactcaggtgag 475
||| ||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 617 taggatctctgaggagagt-tggcctccagagagggctctgactctgggactcaggtgag 675
Query: 476 agcgccagcttgtatcccaggcctctcagagaccagtccatacaggagagcacatgggca 535
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 676 agcgccagcttgtatcccaggcctctcagagaccagtccatgcaggagagcatatgggca 735
Query: 536 gcagaagcaacagaacttcttggacagggtccctttgggccttcatcctcagccaagaag 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gcagaagcaacagaacttcttggacagggtccctttgggccttcatcctcagccaagaag 795
Query: 596 ca 597
||
Sbjct: 796 ca 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_k20.g1 MSMg01no488_k20.g1 CHROMAT_FILE:
MSMg01no488_k20.g1 PHD_FILE: MSMg01no488_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:40 2005
(622 letters)
>mm_chr11_41264886_41265904
Length = 1019
Score = 1094 bits (566), Expect = 0.0
Identities = 585/592 (98%), Gaps = 3/592 (0%)
Strand = Plus / Minus
Query: 31 tatttccattcattctcctgacccttgggcttctctcctgactccacccacaatggatcc 90
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 tatttccattcattctcctgacccttgggcttctctcctgactccacccacaatggatcc 960
Query: 91 tgcccctttccccctctgctcgttcaccctggtccctccctacctctgcctcccatgatt 150
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 959 tgcccctttccccctctgcttgttcaccctggtccctccctacctctgcctcccatgatt 900
Query: 151 attttgttcctccttctaggtgagattgaaacatcctcacttggatcttccctcttgtta 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 attttgttcctccttctaggtgagattgaaacatcctcacttggatcttccctcttgtta 840
Query: 211 aacctcttactgtctgtgagacaatttttcttttattcattctggccttaactgtaaata 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 aacctcttactgtctgtgagacaatttttcttttattcattctggccttaactgtaaata 780
Query: 271 aatacattttcttccacaaaatactatttttcaatgtctccatagagcagtaagaaataa 330
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 779 aatacattt--ttccacaaaatactatttttcaatgtctacatagagcagtaagaaataa 722
Query: 331 acattagattcaggtaatgtattaaatattggatgacatcaaaaactctatgtggtggca 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 acattagattcaggtaatgtattaaatattggatgacatcaaaaactctatgtggtggca 662
Query: 391 tgatattcttggggggaggcattttcctatatgttaacatatactctgagaaatctctaa 450
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tgatattctt-ggggaaggcattttcctatatgttaacatatactctgagaaatctctaa 603
Query: 451 aatcctgcacaaaataaaaaataattgcaaaacaaagtagctatgcacacagaaaatgct 510
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 602 aatcctgcacaaaataaaaaataattgcaaaacaaagtagctatgcgcacagaaaatgct 543
Query: 511 tcaaaatttatttctgaacaatatgctgtgagcaaacattagggctttaaacacagcttc 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tcaaaatttatttctgaacaatatgctgtgagcaaacattagggctttaaacacagcttc 483
Query: 571 agagcatcattgttagtacaatcaaagaactcaaagtctattaaacactaag 622
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agagcatcattgttagtacaatcaaagaactcaaagtctattaaacactaag 431
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1019
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1009
Effective search space: 617508
Effective search space used: 617508
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
