Query= MSMg01no490_e05.b1 MSMg01no490_e05.b1 CHROMAT_FILE:
MSMg01no490_e05.b1 PHD_FILE: MSMg01no490_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:48 2005
(412 letters)
>mm_chr11_112543858_112544669
Length = 812
Score = 737 bits (381), Expect = 0.0
Identities = 405/413 (98%), Gaps = 2/413 (0%)
Strand = Plus / Minus
Query: 1 tgggaataccctctttggtttaataaaactcaaatggctaaattcaaagacaaattgctt 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 462 tgggaataccctctttggtttaataaaactcaaatggc-aaattcaaagacaaattgctt 404
Query: 61 tgcaaattctaggagaacatgccccgtcatttcttcagcgctctatcttgcttgccaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tgcaaattctaggagaacatgccccgtcatttcttcagcgctctatcttgcttgccaggc 344
Query: 121 ctaccaggctaccctactaaaggcttcattggtgaagaagtaccagggtcttgttctgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctaccaggctaccctactaaaggcttcattggtgaagaagtaccagggtcttgttctgga 284
Query: 181 ctccatctgcatcactagattttcccaggatctca-gcagatcgggttaataatgttttt 239
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 283 ctccatctgcatcactagattttcccaggatctcaggcagatcgggttaataatgttttt 224
Query: 240 tagttgggagtaggaagggaatgtgtcttagtaagggttttaccgctgtgaacagacacc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tagttgggagtaggaagggaatgtgtcttagtaagggttttaccgctgtgaacagacacc 164
Query: 300 atgaccaaggcatgtccttataaggactacatttaactggtactggcttacaggttcaga 359
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 163 atgaccaaggcatgtccttataaggacaacatttaactggtactggcttacaggctcaga 104
Query: 360 ggctcagtccattatcatcaaggtgggaacatggcatcatttagacaggcatg 412
|| ||| |||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 103 ggttcaatccattatcatcaaggcgggaacacggcatcatttagacaggcatg 51
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space: 323609
Effective search space used: 323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_e05.g1 MSMg01no490_e05.g1 CHROMAT_FILE:
MSMg01no490_e05.g1 PHD_FILE: MSMg01no490_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:48 2005
(595 letters)
>mm_chr11_112350781_112351775
Length = 995
Score = 1021 bits (528), Expect = 0.0
Identities = 581/604 (96%), Gaps = 9/604 (1%)
Strand = Plus / Plus
Query: 1 tcttcactcagggaactgatgctctccaggaagcccaacccactttcatccagaaatacc 60
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 192 tcttcactcagggaactgatgctctcgaggaagcccaacccactttcatccagaaatatc 251
Query: 61 aggt---------tgattattattattattgttattattattattattatttaagaaagg 111
||| | ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 252 gggtttattattattattattattattattattattattattattattatttaagaaagg 311
Query: 112 atacagttgagaatggaaactgtcccctaatgagttctcaaagactcaatgggacctgaa 171
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 atgcagttgagaatggagactgtcccctaatgagttctcaaagactcaatgggacctgag 371
Query: 172 tgcagggttttgcaatcagggaaggagaggaagatcagtcaccctgtgagacagagcact 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tgcagggttttgcaatcagggaaggagaggaagatcagtcaccctgtgagacagagcact 431
Query: 232 gctcaaaacagggaactggtttccaggtaagcagcattattgacaatataataaccatga 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gctcaaaacagggaactggtttccaggtaagcagcattattgacaatataataaccatga 491
Query: 292 tgtacaacattttctcctagcaaaattgctgccatcttcatcaggccagcggtgcctgct 351
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 492 tgtacaacattttctcctagcaaaattgctgccatcttcatcaagccagcggtgcctgct 551
Query: 352 tgccagagtccatcacaatatggcccgtggactgttggtattcctttagaggggagatag 411
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgccagagtccatcacaatatagcccgtggactgttggtattcctttagaggggagatag 611
Query: 412 agggtcattagaaccttacctgatattccagccacccctcctaaccatttgtatgtgatt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 612 agggtcattagaaccttacctgatattccagccacccctcctaaccatttgtacgtgatt 671
Query: 472 ttgctctaattgcatatagctttggagatctatggaagagatgagtatataaggtggaaa 531
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 672 ttgctctaattgcatatagctttggaggtctatggaagagatgagtatataaggtggaaa 731
Query: 532 agatttggaaaatggggatccacagttatgaagtatcaacaaaaataattttgtggttgg 591
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 732 agatttagaaaatggggatccacagttatgaagtatcaacaaaaataattttgtgattgg 791
Query: 592 ggat 595
||||
Sbjct: 792 ggat 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
