BAC Information

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BAC

Clone NameMSMg01-491H18
Chromosome11 (Build37)
Map Location 78,130,966 - 78,131,546
singlet/doubletsinglet
Overlap geneSpag5
Upstream geneSsh2, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648
Downstream geneAldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491H18.T7 (MSMg01no491_h18.b1)MSMg01-491H18.TJ (MSMg01no491_h18.g1)
ACCAG569468AG569469
length742750
length of high quality
(start - end)
581 (64 - 644)517 (66 - 582)
definitionCHROMAT_FILE: MSMg01no491_h18.b1 PHD_FILE: MSMg01no491_h18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:25 2005CHROMAT_FILE: MSMg01no491_h18.g1 PHD_FILE: MSMg01no491_h18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTTCGAGGATCCGCGGAATTCTTAC
CTTGTTTCAAAGAATAGGGTAGAAGAACAATTAAGATCCTGTCATGGATC
CAGGTGGTGTCCCACACCTTTAATCCCAGTATTCAGGAGGCAGAGGCAGG
TGGATCTCTGAGTTCAAGGCCAGCCTGATGTACAGAGTGAGTTCCAGGGT
AGGAAAGGGCTGCATGAAGAAACCCTGTCTCAGATAATAACAACAAAAAG
ATTCAGCTGTAGGAGTGTGTGTACACTATGTATGTACACACATACACAGA
TGCGTACCACCACACAGATACAGATTAAAAGAACAGGACATAGAAGTAGC
TGAGCTTAGTGACTGATGGCAAGACTGTTGGAAAGGGACACTAGCATCTA
GGACTGGGCCTGGCAAACTTTGAGAGAGTAGCACACTCATAATGGGCACA
TCATAAATGTCTCAGCTTTGTGGGCAGGCCATGTGGCTTTGTCTCAACTA
CTCAGCTCTGCCATGCACCTTAGAGCAGCCCCTGACAGTACTGAAGGGAC
GGAGTCTTCCTGAAACATTGCAAACGCCACCGGCAAGCTGTGATTTGCTG
TCTGTTATGATCTAGAACAGTAAATACTGACCTGGGAACAGATCTTTAGG
AGAGTGCGACAGAGAAAATGGTAAACTTTGTTATGGTAAGTCTCTCCATC
CCAAATATGCCCAGGCAATGAAAACAACACAGTTTATATGAT
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACCAGACTAGAAAAGACAACCTCCAGCTGGCCGAT
GGTGGTGCACCCCTCTAATTCCAGCACTCAGAAGGCAGAGGCAGGTGGAT
CTCTGTGAGTTCCAGGACAACCAAGCTACACAGGGAAACATGGCTCAGTG
GTTAAGAGCACTGACTGACTGTTCTTCCAAAGGTCCAACTGCATGGTGCT
CACAACCATCTGTAATGGGATCCGATGCCCTCTTCTGGTGTGCCTGAAGA
CAGCTACAGTGAATTCATAAACATAAAATAAATCTTTAAAACAACAATAA
AAAAGCAAACAAAGACAATTTGCACTCCAGCCTCTGGAAGGAGAACAGGC
TTTGCATTCCTTCTCTTGAAAGGACAACCCTGCGTGCCTAACATTCCAGG
TTCCCCTGGTCTATGAGTACAGAGACCTCCTTGTCCCTACACAGATCAAA
GCAGGATCCTACCCATGTCTAGCTTGGTGAACCCATGAGCTTGCTGTGTT
TTCTAATAGAACCATGTTGATTGTTTGTTCGTGTGACCTGCTCCAAACAG
CTGTGTCACCAAAAAGTCTCATCCATCACAAGTGATGAGTTCCCATTACT
GCATAGGTGGAGGCTCACAGCCATTTAACCTACTATATATTACCAATGGT
CTCTGTTTCTAGGATCTTGGTGGATCCTGTGGAAAATTACACTCAGAGAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_h18.b1 MSMg01no491_h18.b1 CHROMAT_FILE:
MSMg01no491_h18.b1 PHD_FILE: MSMg01no491_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:25 2005
         (581 letters)



>mm_chr11_78130766_78131746
          Length = 981

 Score = 1093 bits (565), Expect = 0.0
 Identities = 577/581 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagggtagaagaacaattaagatcctgtcatggatccaggtggtgtcccacacctttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagggtagaagaacaattaagatcctgtcatggatccaggtggtgtcccacacctttaa 260

                                                                       
Query: 61  tcccagtattcaggaggcagaggcaggtggatctctgagttcaaggccagcctgatgtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccagtattcaggaggcagaggcaggtggatctctgagttcaaggccagcctgatgtac 320

                                                                       
Query: 121 agagtgagttccagggtaggaaagggctgcatgaagaaaccctgtctcagataataacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagtgagttccagggtaggaaagggctgcatgaagaaaccctgtctcagataataacaa 380

                                                                       
Query: 181 caaaaagattcagctgtaggagtgtgtgtacactatgtatgtacacacatacacagatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaaagattcagctgtaggagtgtgtgtacactatgtatgtacacacatacacagatgc 440

                                                                       
Query: 241 gtaccaccacacagatacagattaaaagaacaggacatagaagtagctgagcttagtgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaccaccacacagatacagattaaaagaacaggacatagaagtagctgagcttagtgac 500

                                                                       
Query: 301 tgatggcaagactgttggaaagggacactagcatctaggactgggcctggcaaactttga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgatggcaagactgttggaaagggacactagcatctaggactgggcctggcaaactttga 560

                                                                       
Query: 361 gagagtagcacactcataatgggcacatcataaatgtctcagctttgtgggcaggccatg 420
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 561 gagagtagcacactcataatgggcacatcataagtgtctcagctttgtgggcagaccatg 620

                                                                       
Query: 421 tggctttgtctcaactactcagctctgccatgcaccttagagcagcccctgacagtactg 480
           |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 621 tggctttgtctcaactactcagctctgccatgtaccttagagcagccactgacagtactg 680

                                                                       
Query: 481 aagggacggagtcttcctgaaacattgcaaacgccaccggcaagctgtgatttgctgtct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagggacggagtcttcctgaaacattgcaaacgccaccggcaagctgtgatttgctgtct 740

                                                    
Query: 541 gttatgatctagaacagtaaatactgacctgggaacagatc 581
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gttatgatctagaacagtaaatactgacctgggaacagatc 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)