BAC Information

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BAC

Clone NameMSMg01-491J11
Chromosome11 (Build37)
Map Location 96,413,797 - 96,558,070
singlet/doubletdoublet
Overlap geneSkap1
Upstream geneNgfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775
Downstream geneSnx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491J11.T7 (MSMg01no491_j11.b1)MSMg01-491J11.TJ (MSMg01no491_j11.g1)
ACCAG569549AG569550
length745758
length of high quality
(start - end)
358 (313 - 670)555 (66 - 620)
definitionCHROMAT_FILE: MSMg01no491_j11.b1 PHD_FILE: MSMg01no491_j11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:33 2005CHROMAT_FILE: MSMg01no491_j11.g1 PHD_FILE: MSMg01no491_j11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,413,797 - 96,414,154)(96,557,516 - 96,558,070)
sequence
CCGCTAAACGACTCACANATTCAGAAGATGCGCGGAATCAAAACTTCTTC
TCCTGTCTGCTCTAGCCTGCTTTTCAGATTCTAGAATCCATGCCCCCCTC
CCGCCCATTTTAATGTTGTGCCCTAAGGGACTTGAGCCCAAATACGCTAG
CAAGAAATAGATCCTATTAGGCAGAATAGGATCTCTGGCTTGTAAAATAT
TGGGATTTTTTTAGGGGAAATTGTTTATTCAGGGGACATTTGCAGATTTT
TTAAAAAAGTGTTAGCCTGTAACTTACATGGCACTGCATATTTTCATAGA
ATGACTTTTTTTGTAGGCACAATTTTATAATTATGTCATTTCACAATGAA
GCCTTGGATTTTATTCTATTAACATGGGGTTAACTGCTGTCACGTGCTCG
CCTCTCTGCAGACAATCACTGTCATCCCAGAAAGACATTCTCCAACACCC
AGCAACAGACTGAAACCTAGAGACTGTCAGAGCTCAGGGTGGGGGGTATC
TGGGTTATCTAATGTAGCCCATCTAATGAATTCACATCATTCTTGCTAAT
ATCTCATTTAATTAATTATCAAATATAGCCATTACAGTTTGGGTCTTTCC
TTTGCAGGACATCTTTCCCGCCCAACTATTATTGGTAATTTATCCTTCAT
GTCTTCCCTAAACTTTCCCTTCCTTGGTTTCAGGCCATTGCCTCTTTTCT
ATACCATCTTCTGAGACTGAATAATTCCCCTAATTCATTTATAGG
AGGTCTGGCGGCCGTCGGGCTTTCAAAATGGGGTGACACNATAGAAGGAA
TTCTGAAATATCGGACCTCCTCTTTTTTTATTTTTTATTTTTAAATGCAA
ATCTAAATGCCATTTTGTGGAACATTTATAATTATGAAAATGGAAAGACA
TCGCCTTGTGTGCGGGGAGAGTCTGTGCGTATGAATATTACATTAATGTG
CCCACACCAGCTCACTGATCCTGCCGGCAGGAGCATAAAAAATGCTTGAG
TGAAACTTTTATTTAGATGCTAAGACTCCGGGCCCCAGCGGGGTGACAGA
GACAGCCCCTGTTTTTTGCCATCGCAGACAGAGCTTGAATTGAATTACCC
AGGGGGGAGGAAGTAGTGATGAGCACGCTTCGCTTATTTAATTTCATTTA
CTTTCAGTACATTATCAGCATGAGGCTTTTCTCTCCCCACCAAGTGAAAC
CCAAGACCACCACCACCAAGAAAACAAAGGCGGAAGGCACAGAGCCGCCT
CCACTCCCGAGTCTCTAATTCCAGGCCTGCGGGGACGGTGCCCTCCCCAT
CTCCTCTCCCCCAGAGTCAAACTCAGCTTGCTGAAATCTGGGCACTGCAT
TTCCCACTTGGTTCTACCCCAACAAGATCCCGAAGAGCAATCTGGCCGGT
GGGGGGGTGTGGAATTGGTNTTTAAATTATTTTATCATTATCTTTTCTCT
TTCATCCATTTACTGATTCTATTATGTTATATTATCTAGCTGCTATAATT
TATTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_j11.b1 MSMg01no491_j11.b1 CHROMAT_FILE:
MSMg01no491_j11.b1 PHD_FILE: MSMg01no491_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:33 2005
         (358 letters)



>mm_chr11_96413597_96414354
          Length = 758

 Score =  692 bits (358), Expect = 0.0
 Identities = 358/358 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaggcacaattttataattatgtcatttcacaatgaagccttggattttattctattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaggcacaattttataattatgtcatttcacaatgaagccttggattttattctattaa 260

                                                                       
Query: 61  catggggttaactgctgtcacgtgctcgcctctctgcagacaatcactgtcatcccagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catggggttaactgctgtcacgtgctcgcctctctgcagacaatcactgtcatcccagaa 320

                                                                       
Query: 121 agacattctccaacacccagcaacagactgaaacctagagactgtcagagctcagggtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacattctccaacacccagcaacagactgaaacctagagactgtcagagctcagggtgg 380

                                                                       
Query: 181 ggggtatctgggttatctaatgtagcccatctaatgaattcacatcattcttgctaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggtatctgggttatctaatgtagcccatctaatgaattcacatcattcttgctaatat 440

                                                                       
Query: 241 ctcatttaattaattatcaaatatagccattacagtttgggtctttcctttgcaggacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcatttaattaattatcaaatatagccattacagtttgggtctttcctttgcaggacat 500

                                                                     
Query: 301 ctttcccgcccaactattattggtaatttatccttcatgtcttccctaaactttccct 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttcccgcccaactattattggtaatttatccttcatgtcttccctaaactttccct 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no491_j11.g1 MSMg01no491_j11.g1 CHROMAT_FILE:
MSMg01no491_j11.g1 PHD_FILE: MSMg01no491_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:33 2005
         (555 letters)



>mm_chr11_96557285_96558239
          Length = 955

 Score = 1027 bits (531), Expect = 0.0
 Identities = 549/555 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctcctctttttttattttttatttttaaatgcaaatctaaatgccattttgtggaacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 cctcctctttttttattttttatttttaaatgcaaatctaaatgccattttgtggaacat 727

                                                                       
Query: 61  ttataattatgaaaatggaaagacatcgccttgtgtgcggggagagtctgtgcgtatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 726 ttataattatgaaaatggaaagacatcgccttgtgtgcggggagaatctgtgcgtatgaa 667

                                                                       
Query: 121 tattacattaatgtgcccacaccagctcactgatcctgccggcaggagcataaaaaatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tattacattaatgtgcccacaccagctcactgatcctgccggcaggagcataaaaaatgc 607

                                                                       
Query: 181 ttgagtgaaacttttatttagatgctaagactccgggccccagcggggtgacagagacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagtgaaacttttatttagatgctaagactccgggccccagcggggtgacagagacag 547

                                                                       
Query: 241 cccctgttttttgccatcgcagacagagcttgaattgaattacccaggggggaggaagta 300
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cccctgtgagttgccatcgcagacagagcttgaattgaattacccaggggggaggaagta 487

                                                                       
Query: 301 gtgatgagcacgcttcgcttatttaatttcatttactttcagtacattatcagcatgagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gtgatgagcacgcttcgcttatttaatttcatttactttcagtacattatcagcatgagg 427

                                                                       
Query: 361 cttttctctccccaccaagtgaaacccaagaccaccaccaccaagaaaacaaaggcggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cttttctctccccaccaagtgaaacccaagaccaccaccaccaagaaaacaaaggcggaa 367

                                                                       
Query: 421 ggcacagagccgcctccactcccgagtctctaattccaggcctgcggggacggtgccctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 366 ggcacagagccgcctccactcccgagtctctaattccaggcctgcggggacagtgccctt 307

                                                                       
Query: 481 cccatctcctctcccccagagtcaaactcagcttgctgaaatctgggcactgcatttccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cccatctcctctcccccagagtcaaactcagcttgctgaaatctgggcactgcatttccc 247

                          
Query: 541 acttggttctacccc 555
           |||||||||||||||
Sbjct: 246 acttggttctacccc 232


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)