BAC Information

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BAC

Clone NameMSMg01-492E15
Chromosome11 (Build37)
Map Location 115,876,264 - 115,876,667
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1
Downstream geneH3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492E15.T7 (MSMg01no492_e15.b1)MSMg01-492E15.TJ (MSMg01no492_e15.g1)
ACCAG570081AG570082
length716779
length of high quality
(start - end)		405 (177 - 581)88 (316 - 403)
definitionCHROMAT_FILE: MSMg01no492_e15.b1 PHD_FILE: MSMg01no492_e15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:29 2005CHROMAT_FILE: MSMg01no492_e15.g1 PHD_FILE: MSMg01no492_e15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGATTT
CCAGTTTTTTCAGGATGAGAGATCTTGCCTTGAATTAGCCTTGAATTCCA
AAAATCCATTGGCCACTGCCTTCTGAATGCTGGAATTTAGGTGTTTACCA
CCACACCAAATGTGTGTGAGTGCACATGTGTGTGTGTGTGTGCTAGTGCG
CGCATGTGTGCTTGAGTCAGGGTCTCACTATTGTAGCCCTGTTAAATAAA
TTTTTTAAAAAAGTTTTAGACCAACCTGGGTAACACATTGTGCCTAAAAA
CTAAGATCCCTATTCCTCAGCAAGCATAGGGTTTAATTAGATCAGAGGAG
GTCAGGTTTGAGACTGTCTGCCTCCCGACCAGATGGTGGGAGCCTCCAGG
CCTTTTATCTTTCTGGCCAGTTGCACAAAGGAGAGTCTAATAATGCCAGC
TGAATTAATGGAAGTCTGATAACGAGAGCAAACACTTAATCCGCGCTCCC
AAGTATCAGGTGCACTGCTGGGCACTTTAGACATAAAGGAACCAATCACA
GCAAAGAGACAATCACAGCCCTATTGCAGAGAGGAGCAGCTGAAGTTCAG
CCAGGTTGAGTCTGTGACCCATGGTCCACTCAACAGAATTGTGGGCTGTT
AGATTTCACACTGATCTGGGTAGAGAATGTGAGCAGAGACGGGTTCGCTG
CGTCCAACTTTGACAT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGAGAACAGNAAGTGTGTACAGGACCTGAGA
AAGTGTGGCTCCTTCCTTACCAGGCCACAGACCACACCTTCCTCCAGAAG
TGCCACTATCACCATGGTGACCACCCCAGCTACGCCAAGCCTCAGCTGCC
CCTGCCAATCTTCACGGTGCGGCACTACGCTGGGACTGTCACTTACCAGG
TATCTGCCCTCAGACAAAGAATGCAGGTGAATCATCAAGGCCGTGTCATC
GTAGTGTCTTCCTCTCCCAAGCTGAATCACCTACCAGAAGTGGCACCGTA
TCTCCATGAGAGCCTCATGCCACACCCACTTCTGAGTGTTATTTTTTAAT
AGCTCCTTAGCTAAGGATGGGGCCTTGAGAGCCCCTCCCATCCATGCTGG
ATTTTTTTTTTTTTTTACATTTGTTTTCAGTTAACGAGGTGGGGGAAGGG
TGCGCGTGTGTACTATGTGGAGGTCCCACTATCCCTTCTCGGGTCTTCTT
TCCCTTTCTTCCCTCGTTTTCACTCTTTTTCTTTCTGACTCCTGTGCCTC
TCTCCTATTCATTCAAGCTCGCCTTTTTATCTCTCCCTTTTTTCCCTCTT
TCCGTTCCCCTCCTCCCCTCTCTCTTTTGATTCCTCCTCCTTACCCCTTT
CCTCTCTTTACTCTCCTCCCCTTCCTCCTCTCCTTTCCCCCTCTTCTTCT
CCTATCCTCCTTCTCCCCTGTCTCTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_e15.b1 MSMg01no492_e15.b1 CHROMAT_FILE:
MSMg01no492_e15.b1 PHD_FILE: MSMg01no492_e15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:29 2005
         (405 letters)



>mm_chr11_115875978_115876782
          Length = 805

 Score =  758 bits (392), Expect = 0.0
 Identities = 401/404 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgtgtgtgtgtgtgctagtgcgcgcatgtgtgcttgagtcagggtctcactattgtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tgtgtgtgtgtgtgtgctagtgcgcgcatgtgtgcttgagtcagggtctcactattgtag 631

                                                                       
Query: 61  ccctgttaaataaattttttaaaaaagttttagaccaacctgggtaacacattgtgccta 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ccctgttaaataaatttttaaaaaaagttttagaccaacctgggtaacacattgtgccta 571

                                                                       
Query: 121 aaaactaagatccctattcctcagcaagcatagggtttaattagatcagaggaggtcagg 180
           |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 570 aaaactaagatccccattcctcagcaagcatagggtgtaattagatcagaggaggtcagg 511

                                                                       
Query: 181 tttgagactgtctgcctcccgaccagatggtgggagcctccaggccttttatctttctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tttgagactgtctgcctcccgaccagatggtgggagcctccaggccttttatctttctgg 451

                                                                       
Query: 241 ccagttgcacaaaggagagtctaataatgccagctgaattaatggaagtctgataacgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ccagttgcacaaaggagagtctaataatgccagctgaattaatggaagtctgataacgag 391

                                                                       
Query: 301 agcaaacacttaatccgcgctcccaagtatcaggtgcactgctgggcactttagacataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 agcaaacacttaatccgcgctcccaagtatcaggtgcactgctgggcactttagacataa 331

                                                       
Query: 361 aggaaccaatcacagcaaagagacaatcacagccctattgcaga 404
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aggaaccaatcacagcaaagagacaatcacagccctattgcaga 287


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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