BAC Information

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BAC

Clone NameMSMg01-492G21
Chromosome11 (Build37)
Map Location 17,809,714 - 17,810,026
singlet/doubletsinglet
Overlap genenone
Upstream geneEgfr, 2810442I21Rik, A630050E13Rik, Plek, 1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486, EG665748
Downstream geneEtaa1, LOC327871, LOC627696, LOC627716, LOC665796, Meis1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492G21.T7 (MSMg01no492_g21.b1)MSMg01-492G21.TJ (MSMg01no492_g21.g1)
ACCAG570187AG570188
length732716
length of high quality
(start - end)		580 (45 - 624)313 (71 - 383)
definitionCHROMAT_FILE: MSMg01no492_g21.b1 PHD_FILE: MSMg01no492_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:39 2005CHROMAT_FILE: MSMg01no492_g21.g1 PHD_FILE: MSMg01no492_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGG
AATTCTCACCTGTACGATACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAATATTCAGGTGACAGCA
GATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAAATCCATCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGACGTAACACATTCACAAAG
GAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCACAACCT
AGGATACCCAAGATATAAGATACAATTTTCCTAACACATGAAACTCAAGA
AAATGAAGACTGAAGTGTGGAACTATGCCCCT

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTCACCTGTTGGATAGTTTTTGGTTCTGG
GATGCTAAGAACTGTGTTTTTACATGTGTGGGATAACTACTGCTTACCTA
TCCATAAAATGTAGTTTAGTTACATTTAACCTCCTCTTTGCATATCTGGG
CCATTTTTGGCAGAGGCTGGGTACCTCATGTCCCCGAGCTCCTGTAGCAA
TGCCCTAGTACCTGTGACACAGGTCTCTATGTCCCTGGGAGTGATCAGAA
GATCGTCTACATACTTTATCAAGGTGACCTCTGGTTACCTCACTAGATAT
TGGCTTAAGTCCTCATGTAGCACGTTGTCGAAAATAACGGGAGAGTTCTT
GAAGCCCTGGTGTTACCATGTCCATGACTGCTGCCTGTTGATCCCAAAAC
CAGATCATGCCCTTTCAAGGGAAAGAAAATTGGGGCCTTTGGGGGACAAA
AAAAGGGTAAAAAGGGGGGTTTTTAATTTCCAAAAAAGTGTTCCCTAACC
CCCTTCTGGGGGGGGGGAAGCCCTCTTTAAAAAAGAATAAAAAGGTTGGG
TTTATAAAGGGGGGGGATCAACATACCTTCCCTGCGTGGTGGACACCCCT
CTTGTGTTCTTTTTTCTCCCCCTCCGGAGTATCTATTTCTTGATCTTTCG
TGCCTTTCCTTATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_g21.g1 MSMg01no492_g21.g1 CHROMAT_FILE:
MSMg01no492_g21.g1 PHD_FILE: MSMg01no492_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:39 2005
         (313 letters)



>mm_chr11_17809514_17810226
          Length = 713

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcacctgttggatagtttttggttctgggatgctaagaactgtgtttttacatgtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcacctgttggatagtttttggttctgggatgctaagaactgtgtttttacatgtgtg 260

                                                                       
Query: 61  ggataactactgcttacctatccataaaatgtagtttagttacatttaacctcctctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggataactactgcttacctatccataaaatgtagtttagttacatttaacctcctctttg 320

                                                                       
Query: 121 catatctgggccatttttggcagaggctgggtacctcatgtccccgagctcctgtagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catatctgggccatttttggcagaggctgggtacctcatgtccccgagctcctgtagcaa 380

                                                                       
Query: 181 tgccctagtacctgtgacacaggtctctatgtccctgggagtgatcagaagatcgtctac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccctagtacctgtgacacaggtctctatgtccctgggagtgatcagaagatcgtctac 440

                                                                       
Query: 241 atactttatcaaggtgacctctggttacctcactagatattggcttaagtcctcatgtag 300
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atactggatcaaggtgacctctggttacctcactagatattggcttaagtcctcatgtag 500

                        
Query: 301 cacgttgtcgaaa 313
           |||||||||||||
Sbjct: 501 cacgttgtcgaaa 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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