Query= MSMg01no493_i04.b1 MSMg01no493_i04.b1 CHROMAT_FILE:
MSMg01no493_i04.b1 PHD_FILE: MSMg01no493_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:05 2005
(616 letters)
>mm_chr11_12358859_12359875
Length = 1017
Score = 1108 bits (573), Expect = 0.0
Identities = 603/613 (98%), Gaps = 1/613 (0%)
Strand = Plus / Plus
Query: 5 gaattcaggcagattgagaccagcaaacgaaactcacagtttctgacaggggagaggttg 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggcagaatgagaccagcaaacgaaactcacagtttctgacaggggagaggttg 264
Query: 65 gagatgtcagagaaaatgccagtaaactaaccaaattcctggagcccttggatggaaagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagatgtcagagaaaatgccagtaaactaaccaaattcctggagcccttggatggaaagc 324
Query: 125 tcacatggcctgaaggctgccaggaaccatcctgggatagaagaaaaggctcccagggca 184
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 325 tcacatggcctgaaggctgccaggaaccatcctgtgatagaagaaaaggctcccagggca 384
Query: 185 agctgaaggcagaaagtgtgaaacagtggcaggattatagaaaggatgctatactggccc 244
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 385 agctgagggcagaaagtgtgaaacagtggcaggattatagaaacaatgctatactggcac 444
Query: 245 cagagactgagaaaccatgggcagatcctgacagtcaactcagacctacaacccacacag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagagactgagaaaccatgggcagatcctgacagtcaactcagacctacaacccacacag 504
Query: 305 agtacttccatttaaaattaactgaacataaggcaggtgaagagctctgttcttcaggtg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtacttccatttaaaattaactgaacataaggcaggtgaagagctctgttcttcaggtg 564
Query: 365 cactggccactcacacagggaagcactgcttcaccctcacaaaatgtgaggccagacagc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cactggccactcacacagggaagcactgcttcaccctcacaaaatgtgaggccagacagc 624
Query: 425 tcagttgaccggcatccaggctgcaggccaccactaccgaagatgctcactaccaccagc 484
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 625 tcagttgaccggcatccaggctgcaggccaccactaccgaagctgctcattaccaccagc 684
Query: 485 acccaaatctcatcccagtgttttctcttccacgggagaatgggagtccaggtcacttca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acccaaatctcatcccagtgttttctcttccacgggagaatgggagtccaggtcacttca 744
Query: 545 agtgcccactaagaccaccttctggtgctgcagtaaaaa-gaatgggtgccctggctgcc 603
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 745 agtgcccactaagaccaccttctggtgctgcagtaaaaaagaatgggtaccctggctgcc 804
Query: 604 ttgtctggaacac 616
|||||||||||||
Sbjct: 805 ttgtctggaacac 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1017
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1007
Effective search space: 610242
Effective search space used: 610242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_i04.g1 MSMg01no493_i04.g1 CHROMAT_FILE:
MSMg01no493_i04.g1 PHD_FILE: MSMg01no493_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:05 2005
(613 letters)
>mm_chr11_12517123_12518134
Length = 1012
Score = 1131 bits (585), Expect = 0.0
Identities = 606/613 (98%), Gaps = 1/613 (0%)
Strand = Plus / Minus
Query: 1 tctagaaatcattttttttaaatctctccagcaagaaattaatgatttgtaaattttgtg 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tctagaaaccattttttttaaatctctccagcaagaaattaatgatttgtaaattttgtg 641
Query: 61 tagcaacatttacaaaaatctatctgtgagtggtttgggccatgtgaattttcttggacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tagcaacatttacaaaaatctatctgtgagtggtttgggccatgtgaattttcttggacc 581
Query: 121 acagtggaattgtaccccagcaagttcaattaatttttactgtgtaccttcatgagccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 acagtggaattgtaccccagcaagttcaattaatttttactgtgtaccttcatgagccag 521
Query: 181 attccatgcactatagaaggagacacatccactttagaaacagaagtgggaagaaggtgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 attccatgcactatagaaggagacacatccactttagaaacagaagtgggaagaaggtgc 461
Query: 241 attagccgggtcctgggacatggaacaggtgctttaggagagtgtaagcagccataggga 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 460 attagccgggtcctgggacatggaacaggtgctttagtagagtgtaagcagccatgggga 401
Query: 301 catcaaaagcggtacattacatttaaattggaagtaaatggattaaccaagtaagaaagt 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 catcacaagcggtacattacatttaaattggaagtaaatggattaaccaagtaagaaagt 341
Query: 361 accagcactgtctgtgatggggaataatgggaaactgaatactggtgggagacctggaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 accagcactgtctgtgatggggaataatgggaaactgaatactggtgggagacctggaag 281
Query: 421 aggggagaacaggtcattcttccaaatgagagaaccccaatgagcttgcttagactctat 480
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 280 aggggagaacaggtcattcatccaa-tgagagaaccccaatgagcttgcttagactctat 222
Query: 481 tggttctaagcaccatggtgtttttcttttatttaagacaagactattgctacatcattc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tggttctaagcaccatggtgtttttcttttatttaagacaagactattgctacatcattc 162
Query: 541 atggctgatttgaactctgaatcctcctgcttcagtatcctgaatgatggaattagagga 600
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 161 atggctgatttgaactctgagtcctcctgcttcagtatcctgaatgatggaattagagga 102
Query: 601 atatataatcaca 613
|||||||||||||
Sbjct: 101 atatataatcaca 89
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1012
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1002
Effective search space: 604206
Effective search space used: 604206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
