BAC Information

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BAC

Clone NameMSMg01-494G15
Chromosome11 (Build37)
Map Location 95,837,034 - 96,007,469
singlet/doubletdoublet
Overlap geneIgf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6
Upstream geneSgca, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2
Downstream geneHoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494G15.T7 (MSMg01no494_g15.b1)MSMg01-494G15.TJ (MSMg01no494_g15.g1)
ACCAG571701AG571702
length727726
length of high quality
(start - end)		692 (36 - 727)576 (62 - 637)
definitionCHROMAT_FILE: MSMg01no494_g15.b1 PHD_FILE: MSMg01no494_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:15 2005CHROMAT_FILE: MSMg01no494_g15.g1 PHD_FILE: MSMg01no494_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,837,034 - 95,837,705)(96,006,894 - 96,007,469)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGC
TTTCTATTCTAAACTTCTTGACAGTGGACATGGGACACATCAGGCCACCA
TGCTTACGGGTCCCAAGAATGATTTCCATCCCAAAGCTTGGATTTGTGGG
GTTTTTCTTTACGATTTATGCATTTAATGTATAGGAATGCTCTATCTGCA
TGTGCACCTGCATGCCAGAAGAGGGCATCAGATCACATACATTACGGATA
GTTGTAAGCCGCCATGTGGTTGCTGGGAATTGAACTCAGGACTGAGCTTG
GATTATTACCTTCCTTAATCAATTAATTAATTAATTAATTTTGCATCGAT
GGAGACTGAACCCAGGGCCTTTGCACATGCTACACTCTACTAATGAGGCA
CATTTTCAACTCTCACTTTGTGAGACAGGGACTCACTAAATACCTCAGGC
TGGCTTGCAGCTCGACATGCAGCTAAGGATGGCCCTGACCTCACCACCAG
GACTAAAACTAACCCACTTCAGTAACAGACAGAGCTACCACATTTAAAAG
AAGAGACAGAAGAACTTCAGGCAAAGCACTATAGCATTTGCCTGCAGTCT
TGGCACTTGGGAGATGAAAGAAGTTAGGAGTTCAAGGCCATACTAAGCTA
TAAGAGGCTCTGTTTAAAANAATAAAACACACAAAAACCCTAGAGAAGAC
TCAGTGACTAAGAGCACTGGCTGCCCA

GGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTACATCCTTGTCCCTCGTGCAGACTGGATGGCGGCTTAA
GCTGGCTACGGAATCTAATCGGGAAGCGAAGCCTCTCAGAAATCTCTTCC
TCTTCCGACCTAGGGCACGGGATTGTGGCTTCCCCACCCTCACCACAGAA
CTGTCTGTGTTGGTGCTTGGAACTGGGTAGTAGCTCAGGTCTCTGAGAAC
CAGGCAAAGCTGCTCCCATTTGAAACCAATCACTAGCAACCAAGTTTTAA
GAAGGCCTCTTTGTGGGAAACACAGGAAGCAGAGCGGGTCTTCACAATCA
CTCTGCCTGAGAGTGGCGGCAGTCGCCGCAAATCTGGCTGGACCTCAGGA
AGGCACAATTCCCAGCCGTCTACCCCCCTCTGGTGGCCATTCCTCAGCTA
AGCGTGACACCCCATGGGCATTGCTGCACGACTAAGGGGAAGTCAATTCA
TTGAACTAATCCAGGTGAACCAGGAAGGCAGAGCCCCCGAAGCTGGCTGA
CCCGGACATGGGGGGGACAGTTTACATCCCCCAACTTCCCTACCTCCAGC
AGCCAGGGTTTGAGTTTCCGGTCCAACAAGATGTCAAAGCCCAGGATTTC
AAAGCAGGCACTGTTGAGCGTGTGGCTGGTGAAGCAGGCGTGGTAATTGT
GTTTGATGACCGGGTGAGCGGATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_g15.b1 MSMg01no494_g15.b1 CHROMAT_FILE:
MSMg01no494_g15.b1 PHD_FILE: MSMg01no494_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:15 2005
         (692 letters)



>mm_chr11_95836831_95837923
          Length = 1093

 Score = 1174 bits (607), Expect = 0.0
 Identities = 661/692 (95%), Gaps = 23/692 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaggctttc---tattctaaacttcttgacagtggacatgggacacatcaggc 60
           |||||||||||||  |   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaggct--caaatattctaaacttcttgacagtggacatgggacacatcaggc 261

                                                                       
Query: 61  caccatgcttacgggtcccaagaatgatttccatcccaaagcttggatttgtggggtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 caccatgcttacgggtcccaagaatgatttccatcccaaagcttggatttgtggggtttt 321

                                                                       
Query: 121 tctttacgatttatgcatttaatgtataggaatgctctatctgcatgtgcacctgcatgc 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tctttacgatttatgtatttaatgtataggaatgctctatctgcatgtgcacctgcatgc 381

                                                                       
Query: 181 cagaagagggcatcagatcacatacattacggatagttgtaagccgccatgtggttgctg 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 382 cagaagagggcatcagatcacatacattacggatggttgtaagccgccatgtggttgctg 441

                                                                       
Query: 241 ggaattgaactcaggactgagcttggattattaccttccttaatcaattaattaattaat 300
           ||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||
Sbjct: 442 ggaattgaactcaggactgagcttggattagcaccttccttaatcaatcaattaattaat 501

                                                                       
Query: 301 taattttgcatcgatggagactgaacccagggcctttgcacatgctacactctactaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 taattttgcatcgatggagactgaacccagggcctttgcacatgctacactctactaatg 561

                                                                       
Query: 361 aggcacattttcaactctcactttgtgagacagggactcactaaatacctcaggctggct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aggcacattttcaactctcactttgtgagacagggactcactaaatacctcaggctggct 621

                                                                       
Query: 421 tgcagctcgacatgcagctaaggatggccctgacctcaccaccaggactaaaactaaccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgcagctcgacatgcagctaaggatggccctgacctcaccaccaggactaaaactaaccc 681

                                                                       
Query: 481 acttcagtaacagacagagctaccacatttaaaagaagagacagaagaacttcaggcaaa 540
           ||||||||||| |     ||             |||||||||||||||||||||||||||
Sbjct: 682 acttcagtaacgg-----gc-------------agaagagacagaagaacttcaggcaaa 723

                                                                       
Query: 541 gcactatagcatttgcctgcagtcttggcacttgggagatgaaagaagttaggagttcaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gcactatagcatttgcctgcagtcttggcacttgggagatgaaagaagttaggagttcaa 783

                                                                       
Query: 601 ggccatactaagctataagaggctctgtttaaaanaataaaacacacaaaaaccctagag 660
           |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 784 ggccattctaagctataagaggctctgtttaaaaaaataaaacacacaaaaaccctagag 843

                                           
Query: 661 aagactcagtgactaagagcactggctgccca 692
           ||||||||||||||||||||||||||||||||
Sbjct: 844 aagactcagtgactaagagcactggctgccca 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1093
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1083
Effective search space:   738606
Effective search space used:   738606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no494_g15.g1 MSMg01no494_g15.g1 CHROMAT_FILE:
MSMg01no494_g15.g1 PHD_FILE: MSMg01no494_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:15 2005
         (576 letters)



>mm_chr11_96006694_96007669
          Length = 976

 Score = 1075 bits (556), Expect = 0.0
 Identities = 571/576 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacatccttgtccctcgtgcagactggatggcggcttaagctggctacggaatctaatcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 tacatccttgtccctcgtgcagactggatggcggcttaagctggctacggaatctaatcg 717

                                                                       
Query: 61  ggaagcgaagcctctcagaaatctcttcctcttccgacctagggcacgggattgtggctt 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 716 ggaagcgaagcctctcagaaatctcttcctcttcccacctagggcacgggattgtggctt 657

                                                                       
Query: 121 ccccaccctcaccacagaactgtctgtgttggtgcttggaactgggtagtagctcaggtc 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 656 ccccaccctcaccacagaactgtctatgttggtgcttggaactgggtagtagctcaggtc 597

                                                                       
Query: 181 tctgagaaccaggcaaagctgctcccatttgaaaccaatcactagcaaccaagttttaag 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 596 tctgagaaccaggcaaagctgctcccacttgaaaccaatcactagcaaccaagttttaag 537

                                                                       
Query: 241 aaggcctctttgtgggaaacacaggaagcagagcgggtcttcacaatcactctgcctgag 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 536 aaggcctctttgtgggaaacacaggaagcagagcgggtcttcacaatcactctgtctgag 477

                                                                       
Query: 301 agtggcggcagtcgccgcaaatctggctggacctcaggaaggcacaattcccagccgtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 agtggcggcagtcgccgcaaatctggctggacctcaggaaggcacaattcccagccgtct 417

                                                                       
Query: 361 acccccctctggtggccattcctcagctaagcgtgacaccccatgggcattgctgcacga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 acccccctctggtggccattcctcagctaagcgtgacaccccatgggcattgctgcacga 357

                                                                       
Query: 421 ctaaggggaagtcaattcattgaactaatccaggtgaaccaggaaggcagagcccccgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctaaggggaagtcaattcattgaactaatccaggtgaaccaggaaggcagagcccccgaa 297

                                                                       
Query: 481 gctggctgacccggacatgggggggacagtttacatcccccaacttccctacctccagca 540
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gctggctgacctggacatgggggggacagtttacatcccccaacttccctacctccagca 237

                                               
Query: 541 gccagggtttgagtttccggtccaacaagatgtcaa 576
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 gccagggtttgagtttccggtccaacaagatgtcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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