XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCGCTGAT
TTTCTAAACATAAATGTATCTGTAGTGGTTTCCACACTGGCCTGAGGAGG
GGCATAGTATGATTATTTTATTTCTAATATGATTTTCCCGTTTGTTATTT
CATGGGGGGCACATATTGAGGTCAGGCAGAGAACAACTTGTGCAGTCACT
TGTCTTCTGCCATGTGGGTCCCAGGAATTGAACCCAGGTCCTCATACTTG
GCAGTAAGTACCTTTGCATGCTGAGTCATCTCATCAGCCTAATGTGAACA
CTTTGATTACCACTTTTCACAAGTACAGAGAATAAATATTTGATAATTCC
TCTCAAATGTGTATCGAGGTCTATATACCTCTAGTGTATAAGTGTTTCAC
AACTAAGTCATGGGAAAAGAAATGCAAAGCTGCACAGCTTCACAAGGGTA
TGGTATTTGTTTCTGGCAGGGGCATGCCCTTCTGGGAATCAATGTAGTAA
CAGAGTCTTCTGAAAGCCATAACATTCCCAGATGCATTGATTCACTAATT
CTTCTGCTAGCTCCATTAAAAAAACAAAACAAACAAAAATCTTCCAAAGG
AAACCAGTTTTGGAGACAATGGTGGACTGCATGAGTCAACAGCAAGGAGT
GACAGATACATGAGCTTCATCAAGAAATGGCTGAGAGCCTGCACCGTGTC
CCCCTCCTCAGCATCACGTTCTTCCCCTAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAATGGGTGTT
GGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTT
TTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTAT
ATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGA
TGATTTCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTAAGG
ATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTT
TGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAA
ATGAGTTGGGTAGAGTACCTTCTACTTCTATCTTGTGAAATAGTTTGTGC
AGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAA
CCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATAACTGCTT
CTATTTCTTTAGGGGATATGGGACTGTTTAGAAGGTCAACTTGATCCTGA
TTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAG
GTTTTCCAGTTTTGTTGAGTATAAGCTTTTGTAGAAGGATCTGATGGTGT
TTTGGATTTCTTCAGGATCTGTTGTTATGTCTCCC

Query= MSMg01no494_k03.b1 MSMg01no494_k03.b1 CHROMAT_FILE:
MSMg01no494_k03.b1 PHD_FILE: MSMg01no494_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:31 2005
         (605 letters)



>mm_chr11_12257878_12258879
          Length = 1002

 Score = 1027 bits (531), Expect = 0.0
 Identities = 579/605 (95%), Gaps = 18/605 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacataaatgtatctgtagtggtttccacactggcctgaggaggggcatagtatgattat 60
           ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 216 aacataaatgtctctgtagtggcttccacactggcctgaggaggggcatagtatgattat 275

                                                                       
Query: 61  tttatttctaatatgattttcccgtttgttatttcatggggggcacatattgaggtcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tttatttctaatatgattttcccgtttgttatttcatggggggcacatattgaggtcagg 335

                                                                       
Query: 121 cagagaacaacttgtgcagtcacttgtcttctgccatgtgggtcccaggaattgaaccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cagagaacaacttgtgcagtcacttgtcttctgccatgtgggtcccaggaattgaaccca 395

                                                                       
Query: 181 ggtcctcatacttggcagtaagtacctttgcatgctgagtcatctcatcagcctaatgtg 240
           |||||||||||||               ||||||||||||||||||||||||||||||||
Sbjct: 396 ggtcctcatactt---------------tgcatgctgagtcatctcatcagcctaatgtg 440

                                                                       
Query: 241 aacactttgattaccacttttcacaagtacagagaataaatatttgataattcctctcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacactttgattaccacttttcacaagtacagagaataaatatttgataattcctctcaa 500

                                                                       
Query: 301 atgtgtatcgaggtctatatacctctagtgtataagtgtttcacaactaagtcatgggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 atgtgtatcgaggtctatatacctctagtgtataagtgtttcacaactaagtcgtgggaa 560

                                                                       
Query: 361 aagaaatgcaaagctgcacagcttcacaagggtatggtatttgtttctggcaggggcatg 420
           |||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||
Sbjct: 561 aagaaatgcaaagctgcacagcttcacaggggtatggcgtttgtttctggcaggggcatg 620

                                                                       
Query: 421 cccttctgggaatcaatgtagtaacagagtcttctgaaagccataacattcccagatgca 480
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 621 cccttctgggaatcaatgtagtaacag--tcttctgaaagccataacattcccagatgca 678

                                                                       
Query: 481 ttgattcactaattcttctgctagctccattaaaaaaacaaaacaaacaaaaatcttcca 540
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 679 ctgattcactaattcttctgctagctccattaaaaaa-caaaacaaacaaaaatcttcca 737

                                                                       
Query: 541 aaggaaaccagttttggagacaatggtggactgcatgagtcaacagcaaggagtgacaga 600
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 agggaaaccagttttggagacaatggtggactgcatgagtcaacagcaaggagtgacaga 797

                
Query: 601 tacat 605
           |||||
Sbjct: 798 tacat 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1002
Length adjustment: 10
Effective length of query: 595
Effective length of database: 992
Effective search space:   590240
Effective search space used:   590240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)