Query= MSMg01no494_l24.b1 MSMg01no494_l24.b1 CHROMAT_FILE:
MSMg01no494_l24.b1 PHD_FILE: MSMg01no494_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:40 2005
(633 letters)
>mm_chr11_48412633_48413665
Length = 1033
Score = 1197 bits (619), Expect = 0.0
Identities = 628/631 (99%)
Strand = Plus / Plus
Query: 3 gaattctcttgaatgtactttgacccatgtaagtctgtaaagctggactaacatctttgc 62
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctcttgaatgcactttgacccatgtaagtctgtaaagctggactaacatctttgc 262
Query: 63 aacaaacatacagagatcactgcaaaccacaaatacccttccaggtattcatcagcctag 122
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 263 aacaaatatacagagatcactggaaaccacaaatacccttccaggtattcatcagcctag 322
Query: 123 tatctctgctttgacctcttaggatttgtcatttcaacccttcaactcttctatccctct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tatctctgctttgacctcttaggatttgtcatttcaacccttcaactcttctatccctct 382
Query: 183 gttagatatctttaaggtggtttccctgtacaaatacaaagtctagcgcagtatctttca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gttagatatctttaaggtggtttccctgtacaaatacaaagtctagcgcagtatctttca 442
Query: 243 ttcaataggctggatccaagccaaaaaaatggaggcaacccactccgtcaaggtcttgaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttcaataggctggatccaagccaaaaaaatggaggcaacccactccgtcaaggtcttgaa 502
Query: 303 caacatctgtgttttttcagctcagcatttgccatccatcaccgaggagactggaacaga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 caacatctgtgttttttcagctcagcatttgccatccatcaccgaggagactggaacaga 562
Query: 363 aaagtacaaggtcattttcctgagccccagcaactccattctccaaggttggaacgtttt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaagtacaaggtcattttcctgagccccagcaactccattctccaaggttggaacgtttt 622
Query: 423 ctccctttctgcaaacagtagaccagatggtccctgaaacttggcttctgtggcttaact 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctccctttctgcaaacagtagaccagatggtccctgaaacttggcttctgtggcttaact 682
Query: 483 ctaattacaatgttagttagcaatgagtttggtgattcaaaatcactggtcgagtctttc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctaattacaatgttagttagcaatgagtttggtgattcaaaatcactggtcgagtctttc 742
Query: 543 caggcaatcgggctttcttgtgttctcactaagaacagggtgggtttgtgagtttgtcat 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 caggcaatcgggctttcttgtgttctcactaagaacagggtgggtttgtgagtttgtcat 802
Query: 603 ctgccttgagcaggcttcctgtactataatt 633
|||||||||||||||||||||||||||||||
Sbjct: 803 ctgccttgagcaggcttcctgtactataatt 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no494_l24.g1 MSMg01no494_l24.g1 CHROMAT_FILE:
MSMg01no494_l24.g1 PHD_FILE: MSMg01no494_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:40 2005
(560 letters)
>mm_chr11_48543405_48544364
Length = 960
Score = 905 bits (468), Expect = 0.0
Identities = 471/472 (99%), Gaps = 1/472 (0%)
Strand = Plus / Minus
Query: 1 caagaagagtggtagaggctttgaacatccaagtccaacatgaaaggctgcctgtttcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 caagaagagtggtagaggctttgaacatccaagtccaacatgaaaggctgcctgtttcag 413
Query: 61 cattcttagaagatttggtttgattacaaggtttagagatatggtcatccttgtgctaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cattcttagaagatttggtttgattacaaggtttagagatatggtcatccttgtgctaca 353
Query: 121 acttttcccaggaaaaagcacttcagctagatcccttactctgccttaaaattaacatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 acttttcccaggaaaaagcacttcagctagatcccttactctgccttaaaattaacatgg 293
Query: 181 agtctgtgtctctgagaccatattatttcctaacagaaactgaggctagtaggactgttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 agtctgtgtctctgagaccatattatttcctaacagaaactgaggctagtaggactgttc 233
Query: 241 cagtacacgtagcattttggatagaacttagctgttttgggcatttgatagcatctcact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 cagtacacgtagcattttggatagaacttagctgttttgggcatttgatagcatctcact 173
Query: 301 atgttgcttaggctggcttgaaactcatgattttcctggcacagcctccctagtgctgag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 atgttgcttaggctggcttgaaactcatgattttcctggcacagcctccctagtgctgag 113
Query: 361 tttccaggcttgagccaccacagccagctcatttagtcttattcttttttttttttgac- 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 tttccaggcttgagccaccacagccagctcatttagtcttattcttttttttttttgact 53
Query: 420 ttttttttattattacgtattttcctcaattacatttccaatgctatcccaa 471
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 ttttttttattattacgtattttcctcaattacatttccaatgctatcccaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
