BAC Information

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BAC

Clone NameMSMg01-495A08
Chromosome11 (Build37)
Map Location 12,205,120 - 12,205,340
singlet/doubletsinglet
Overlap geneCobl
Upstream geneZpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1, Fignl1, Ddc, Grb10
Downstream geneLOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495A08.T7 (MSMg01no495_a08.b1)MSMg01-495A08.TJ (MSMg01no495_a08.g1)
ACCAG572163AG572164
length735736
length of high quality
(start - end)
649 (70 - 718)224 (90 - 313)
definitionCHROMAT_FILE: MSMg01no495_a08.b1 PHD_FILE: MSMg01no495_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:00 2005CHROMAT_FILE: MSMg01no495_a08.g1 PHD_FILE: MSMg01no495_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGACGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATAATACACTAACCTGAAAGCTATAACATACACACAGAG
AACCTGGTATAGCTGTGAGCCTTTGTATCTGTATCTTTGTATCTCCCATC
TGCTGCAGGAGGGAGCTTCTCTGATGGTGGCTGAATAAGTCTATGATTTA
TGAATATAGCAGAGTATTATTAGGAGTCATTTTATTACTACCTGTACTTT
GTTTTATTTCATTTTATTTACATTTTAGACCAGTAGTATTTGGTTTTACC
TTAAGGCTCTGGTCTATCTTTTTTCTGATTCTTGGTCAACTAAGCAGTGT
CAGGTATGGGTTCCATCTCCTGGAGTGGGCCTTCAATCAAATTAGACATT
GATTGGCTAATCCCCTAAGCTTTGCCACCATTGCTGTAGCATACTTTACA
AGTAGCATTATAGATCAAAGGTGTTGTGGCTGGGTTGGTGTTTACATTTC
TATTTTGGTAGCCTGCAAATATCTGCATACACCAAAGGCACTAGAATATA
AAAGTGAAAATTATACCTAGGAACCAGCATAACTTCTTCAGTGAGTTCTG
TGATGTTGTCTTTAGCCACAGGTGCCTTGATGTCCCTCTGTGGAGAACAA
TATATTGTCTCTGCAACACCCTCAGTTATTTAGGGATTTCTTTGTGTGAA
CGACTTAATTGAATATAATGTAGTCTTGGCACTAG
NNCCACTATGATGTGGGTAGTCTGGCGGCCGCCTGGATACACCACTTGGG
GTGACACNANAGAAGTAACCCAAAAACGCCTCAGNGGNCTGAAGGGTATG
GAATAAAGCAGCAGACAGTTAGAAAACTTGATGTCCTCTTGCCCTGTGGC
TCAGTTTCTCATCCTATGGTAACTGCCTTCTGTCTTTGAGTTTACTTCTC
CAGATACGGCATTTCTTAGCCCTACACATCATCAATCACCTTTCTTCCGT
TCTCCCCTACCCACAAGGACACATGTAATAGAGTAGACTTAGAGGCCCCA
GAAGCCATTACATGAGTTTTTTTATTTCATTCTGTTCAGTCTTCCTTGGC
CCCTGCAATCCAGTTCAGCCCCTCGGACATACCTGAGTCCATTCCTTTCT
CCTGTGTGTGCACCAGAATCTTAAGTATTCAATGAAAAGCTGTCATGTTG
CCTAATTAGCAGAACTGGCCTGTCAGTTGCTTACAACATTGAAAATGGAT
CACCCACCCAATCAGGCAGACTATAACTTGCCTTTTTTAATTCAGGATTT
AAAAAATAGGAAAAAAAAAAAAGGAAATGTTTTCCATAAAGCAGCCATCT
AGTTACTCCTCTAACCTTGTCTTGTGAAAGGCAAAAGTGGTGGGCATATT
AAGTATCATACACTCCTCGCCTACTCTCCTAATCAGAATTCTGGCTGCTT
GAGGCGACATGGATTCTTAGCAGAGATATTTTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_a08.g1 MSMg01no495_a08.g1 CHROMAT_FILE:
MSMg01no495_a08.g1 PHD_FILE: MSMg01no495_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:00 2005
         (224 letters)



>mm_chr11_12204920_12205543
          Length = 624

 Score =  420 bits (217), Expect = e-122
 Identities = 220/221 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaagggtatggaataaagcagcagacagttagaaaacttgatgtcctcttgccctgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgaagggtatggaataaagcagcagacagttagaaaacttgatgtcctcttgccctgtgg 362

                                                                       
Query: 61  ctcagtttctcatcctatggtaactgccttctgtctttgagtttacttctccagatacgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctcagtttctcatcctatggtaactgccttctgtctttgagtttacttctccagatacgg 302

                                                                       
Query: 121 catttcttagccctacacatcatcaatcacctttcttccgttctcccctacccacaagga 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 301 catttcttagccctacacatcatcaatcacctttcttccgtcctcccctacccacaagga 242

                                                    
Query: 181 cacatgtaatagagtagacttagaggccccagaagccatta 221
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cacatgtaatagagtagacttagaggccccagaagccatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)