Query= MSMg01no495_b02.b1 MSMg01no495_b02.b1 CHROMAT_FILE:
MSMg01no495_b02.b1 PHD_FILE: MSMg01no495_b02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:04 2005
(645 letters)
>mm_chr11_28800579_28801623
Length = 1045
Score = 1195 bits (618), Expect = 0.0
Identities = 636/642 (99%), Gaps = 2/642 (0%)
Strand = Plus / Plus
Query: 5 gaattcttatat-ttactattgggataaatgcagtgctcattttttcccgatttttgtta 63
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttatacattactattgggataaatgcagtgctcattttttcccgatttttgtta 264
Query: 64 agcttaaaggaaaagttaattctacagtaattcttaaagagacccaccaataatattaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcttaaaggaaaagttaattctacagtaattcttaaagagacccaccaataatattaaa 324
Query: 124 aagtcttttccactgccacatttgcatatagcaccttatcgctattttcaagcacagata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagtcttttccactgccacatttgcatatagcaccttatcgctattttcaagcacagata 384
Query: 184 aggagacagatccttgccacttgcctagatccagagtgtaccatatgcatactcccaaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggagacagatccttgccacttgcctagatccagagtgtaccatatgcatactcccaaag 444
Query: 244 atggaaactcattacttccatatgcatcaaggtatctaatatctgtaacaccttttcttg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atggaaactcattacttccatatgcatcaaggtatctaatatctgtaacaccttttcttg 504
Query: 304 aatgctaaactaaactctagcttccttcaatttcttctaactacttctagctcagccatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatgctaaactaaactctagcttccttcaatttcttctaactacttctagctcagccatt 564
Query: 364 tggaaattgtatgctccaaatagtttcctctttcctctaaatggcctttcaaatgctaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggaaattgtatgctccaaatagtttcctctttcctctaaatggcctttcaaatgctaaa 624
Query: 424 gtctactctgagccaactgtaactcttatgggttgagcacagagaagaaaactgaagagc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtctactctgagccaactgtaactcttatgggttgagcacagagaagaaaactgaagagc 684
Query: 484 aatgggagctggtgtgaacatggactgctggttcgcaccactttggacagcactcagctt 543
||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||
Sbjct: 685 aatgggagctggtgtgaacatggactgttggttctcaccactttggacggcactcagctt 744
Query: 544 gcagtagtctccactctcatgcttactaccttctctaagccataagagtgttagaaatgg 603
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcagta-tctccactctcatgcttactaccttctctaagccataagagtgttagaaatgg 803
Query: 604 ccccctctttttcagagcaagagctgttctagttttgatgct 645
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ccccctctttttcagagcaagagctgttctagttttgatgct 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no495_b02.g1 MSMg01no495_b02.g1 CHROMAT_FILE:
MSMg01no495_b02.g1 PHD_FILE: MSMg01no495_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:04 2005
(536 letters)
>mm_chr11_28858327_28859267
Length = 941
Score = 876 bits (453), Expect = 0.0
Identities = 511/533 (95%), Gaps = 5/533 (0%)
Strand = Plus / Minus
Query: 1 acctacttgtttgtatcctcatttatgtcatttagtttttgtaacagaaaacctttaaaa 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 733 acctacttgtttgtatcctcatttatgtcatttattttttgtaacagaaaacctttaaaa 674
Query: 61 ccatcatctggcatgtcacctatttaactatgtttgagatcaataaggagttaccatctc 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 673 ccatcatctggcatgtcacctatttaactgtgtttgagatcaataaggagttaccatctc 614
Query: 121 tttcaggagtcatgttgtcttggctttccatgttgcatgttttctatgatgtgcgtttct 180
||||||||||||||||| ||||||||||||||||||||||||||| |||||| | |||||
Sbjct: 613 tttcaggagtcatgttgccttggctttccatgttgcatgttttctttgatgtacatttct 554
Query: 181 atggtactatttgtgtatctgttgactggaatatctttgttttcttgaggagtgggagta 240
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 553 atggtactatttgtgtatctgttgactggaatacctttgttttctcgaggagtgggagta 494
Query: 241 tctttttactgagcaacctactcttggctgaactcaagagcaattcagcaaggagaaaac 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tctttttactgagcaacccactcttggctgaactcaagagcaattcagcaaggagaaaac 434
Query: 301 ctacgatttttggaaaaagtttccaccatgaagctgcagaggctttctctgattgacctc 360
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctacgattttgggaaaaagtttctaccatgaagctgcagaggctttctctgattgacctc 374
Query: 361 tctgagttgattttt-----tctctttgctcttccatttaacgtttaattccctttgtga 415
|||| |||||||||| ||||||||||||||||||||| |||||||| |||||||||
Sbjct: 373 tctgtgttgatttttctctttctctttgctcttccatttaatgtttaatttcctttgtga 314
Query: 416 ttattatagtgttcctcttctcaaaatagagttgttcttttctgtctttgactttcttca 475
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttattatagtgttcctcttcttaaaatagagttgttcttttctgtctttgactttcttca 254
Query: 476 cttgatcataaggagacaggatctagtcccaccatcttacctggaagcagctt 528
|||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 253 cttgatcataaggagacaagatctagttccaccatcttacctggaagcagctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 941
Length adjustment: 10
Effective length of query: 526
Effective length of database: 931
Effective search space: 489706
Effective search space used: 489706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
