BAC Information

Click to search

BAC

Clone NameMSMg01-495I06
Chromosome11 (Build37)
Map Location 105,196,034 - 105,196,259
singlet/doubletsinglet
Overlap geneMrc2
Upstream gene1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik
Downstream geneRnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495I06.T7 (MSMg01no495_i06.b1)MSMg01-495I06.TJ (MSMg01no495_i06.g1)
ACCAG572541AG572542
length745778
length of high quality
(start - end)
104 (175 - 278)231 (82 - 312)
definitionCHROMAT_FILE: MSMg01no495_i06.b1 PHD_FILE: MSMg01no495_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:36 2005CHROMAT_FILE: MSMg01no495_i06.g1 PHD_FILE: MSMg01no495_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCGCTCATAATTGCGGCCGGCAAANGAACACAATTGCATTTGATCCG
NGGAANNCCTTGCTGCGNGGACCGAAGCCCCAGCAGGACATGGGGGATGG
GCTGGGGTGGGGGTGGTAGACATGTGGAGCAGTTGCCTTTCCAAAGGAGA
CTTTACCCAATTTTAAAGTGGTGGCACGCTGGGGGAGGAGTGGAGCAAAC
TTTACTCTAAGCACTCAGGAGGCGGAGGCAGGCTGATCTCTGAGTTGTAT
TTAGAATGATTTACAGAGTGAGTTCCAGGACAGTCAGGGCTGCACAGAGA
AACCCGCGCCCCTTTTTATATTTTACAAAAAAGAAGCAGGAGAGAGGAGA
ANATTTTTTTTTTCCCCCCCACAGGGGGGGGGGGGGGGTCCCGATCCAAG
GAGGGGGGGCCCCCCCTTTTTATATTTTAAACCCCCACGTTGTGCAACTC
TCTGCGCTACGCACTACGCCGTGGGCGCCGCGGACGACCTCGACATCCCG
CCCAACAACCCCCCCGGTTCCCGGTTAACCGCTCGCTTCCCTTAACCGCT
CGCGGTGTTCTGTTCGCCCCCTTTTCGCTCGCTTGCCCTCCTTACCGCCC
GCGCGGCGTTTTTGGTATATCCCCCGCCGCGCAGCGCCACGAAAACCTCT
TTTTTTTTTTTCTTCCTCCCACACATTTTCGCCCGCACATTATCTCCCCC
GTTTTTGCCCCCCGCCCTCTATCTACTTGTTCTCTCCCGCGCCCG
NCCCCCGATGAAGTGGGAGGCCTGGCGGCCGCCCGGATGATCATTTGGGG
GNGACCNANACAAGTATCACCCACAGGCCAGGACAGCCAGGAATACACAG
AGAAACCCTGTCTCAAAAAGACCGAAAAAAAAAAAAAGAAAGAAAGAAAG
AAAAAGAATCAACATTAGGAAAAACTAGCATCCAACTTGGACACCAGAGC
TGAGAAGCTACGGACAGATGGAGGACGAAGAGAGGGCTGGGTGGACCTCG
GGACTCTGCAGAGTGGAGTCTGGTGGGATGCTCCTGGGGAGGGAGGGAGT
GTGGGAGGCAGNNCCCCTTTTTTTTTTTANANANGACCACCCCACGGGCA
GAGACAGCCCTGCTTTTTGCAGTCCGGTGGGAGGCGCCGGGGGAGGCAGG
CAGTGTGTTTAGAATTTCCCCCCCCCGGTTTTTTTTACGTCTGTTGTGTG
AGAGCTACCGCCACAGCTCACCTCCCTCTACTGACACCACGGGTGTAAGT
TAAGCACGCCCACAGTCGCTACGGGTGTCCCAGCACCGACGCCCCGTCCC
TTTCGGCCCCCGTGCACGCACACCCAACGCTGCCCCCCTAGCGTCCCCGC
CTATACGCACCACGCACCACCGCTGCGCTGGCGCGTCGACCAAGAGCCCC
GCGCCCTCATTTTTTTTTTTTTTTTCTACCGACCGCCCCTCCGCCCCCTT
CACACCGGCGTCCCCTCGGCCCCCCCATCGGCACCCCCGCCTTGGCCCTC
CCCCCGCTCCTCCCCACCTCGCCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_i06.g1 MSMg01no495_i06.g1 CHROMAT_FILE:
MSMg01no495_i06.g1 PHD_FILE: MSMg01no495_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:36 2005
         (231 letters)



>mm_chr11_105195757_105196387
          Length = 631

 Score =  416 bits (215), Expect = e-121
 Identities = 224/227 (98%), Gaps = 1/227 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacagccaggaatacacagagaaaccctgtctcaaaaagaccgaaaaaaaaaaaaagaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 503 gacagccaggaatacacagagaaaccctgtctcaaaaagaccgaaaaaaaaaaaaa-aaa 445

                                                                       
Query: 61  gaaagaaagaaaaagaatcaacattaggaaaaactagcatccaacttggacaccagagct 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 444 gaaagaaagaaaaagaatcaacattaggaaaaaatagcatccaacttggacaccagagct 385

                                                                       
Query: 121 gagaagctacggacagatggaggacgaagagagggctgggtggacctcgggactctgcag 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 384 gagaagctacggacagatggaggacaaagagagggctgggtggacctcgggactctgcag 325

                                                          
Query: 181 agtggagtctggtgggatgctcctggggagggagggagtgtgggagg 227
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtggagtctggtgggatgctcctggggagggagggagtgtgggagg 278


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)