Query= MSMg01no495_j24.b1 MSMg01no495_j24.b1 CHROMAT_FILE:
MSMg01no495_j24.b1 PHD_FILE: MSMg01no495_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:44 2005
(599 letters)
>mm_chr11_41562811_41563809
Length = 999
Score = 1143 bits (591), Expect = 0.0
Identities = 597/599 (99%)
Strand = Plus / Plus
Query: 1 cagagttccaagcaattcagagagtgaacttgtcatagacccactaaaagaccattctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagttccaagcaattcagagagtgaacttgtcatagacccactaaaagaccattctgg 260
Query: 61 gccaagggtggaaactgtaagaacaaatacaaaaattcaaaccccaagagagtgcagtaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccaagggtggaaactgtaagaacaaatacaaaaattcaaaccccaagagagtgcagtaa 320
Query: 121 ataacttattgctgtcttttgctgcaagaagccagtttccttcaaacacaactttatcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ataacttattgctgtcttttgctgcaagaagccagtttccttcaaacacaactgtatcta 380
Query: 181 cctgatctacttctccacctcctacatctgatgtcctacttacaacagaatacccactat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgatctacttctccacctcctacatctgatgtcctacttacaacagaatacccactat 440
Query: 241 cacagttctatatctgtaaacttatggtggagtgagaaacagactgccttggccacacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacagttctatatctgtaaacttatggtggagtgagaaacagactgccttggccacacag 500
Query: 301 taaattctgtggaactcctcagttttctagcagggtgtcacataagactaatacatgttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaattctgtggaactcctcagttttctagcagggtgtcacataagactaatacatgttc 560
Query: 361 actataatcctggtgaatagcacacagtcagttccagaaccacttggtcatttataatga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actataatcctggtgaatagcacacagtcagttccagaaccacttggtcatttataatga 620
Query: 421 ctgagctgctcactactatggtctcagccaatgtttcagcgaaaagatagatacaataaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgagctgctcactactatggtctcagccaatgtttcagcgaaaagatagatacaataaa 680
Query: 481 aggaaaaagaaatgcccaagaagtagaatagtctttccaaaaccacatctgcatgcatga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggaaaaagaaatgcccaagaagtagaatagtctttccaaaaccacatctgcatgcatga 740
Query: 541 ccgtttaatttgcgggcttgaaacaaaggtgggaacctacagtgattgtgaaaagcact 599
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccatttaatttgcgggcttgaaacaaaggtgggaacctacagtgattgtgaaaagcact 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no495_j24.g1 MSMg01no495_j24.g1 CHROMAT_FILE:
MSMg01no495_j24.g1 PHD_FILE: MSMg01no495_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:44 2005
(614 letters)
>mm_chr11_41769876_41770891
Length = 1016
Score = 1158 bits (599), Expect = 0.0
Identities = 612/617 (99%), Gaps = 3/617 (0%)
Strand = Plus / Minus
Query: 1 actatgtttatataagtttgttccttgaaaaatattatttaaataaatgcaatataaatt 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 876 actatgtttatataagtttgttccttgaaaaatattatttgaataaatgcaatataaatt 817
Query: 61 tttatgattactatttaagataaatataagaattactctcttgttttggacagtaagtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tttatgattactatttaagataaatataagaattactctcttgttttggacagtaagtga 757
Query: 121 aaaccagtgagattaaacacattgtcttcttagtcagtagaattcttaaagacacatcag 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 aaaccagtgagattatacacattgtcttcttagtcagtagaattcttaaagacacatcag 697
Query: 181 tgtcagtatataaaactaatgtctcctattacatgtgatgttttgaagtaaatataaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tgtcagtatataaaactaatgtctcctattacatgtgatgttttgaagtaaatataaaaa 637
Query: 241 acatcaaatgattcgtgaaaattaaatgtgagggagaaaatgtgaccaagaacatagggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 acatcaaatgattcgtgaaaattaaatgtgagggagaaaatgtgaccaagaacatagggt 577
Query: 301 cagtactttaactgcaatgaatatgtttattttctgtgaatgggtgattcatctgtgcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cagtactttaactgcaatgaatatgtttattttctgtgaatgggtgattcatctgtgcta 517
Query: 361 catttgcctttatagaatgctctgctcaatgttgcagacctaaaatcttaggtatgtatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 catttgcctttatagaatgctctgctcaatgttgcagacctaaaatcttaggtatgtatc 457
Query: 421 atacaaagaaaagcaaatacctggagaaaacaatgtttctttctctttatttcattaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 atacaaagaaaagcaaatacctggagaaaacaatgtttctttctctttatttcattaaaa 397
Query: 481 gaatattactgagaaggtcacaacattttgcctttgaaaaaagcttggaaagaattttat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gaatattactgagaaggtcacaacattttgcctttgaaaaaagcttggaaagaattttat 337
Query: 541 ttggtgtgtgtgtgca--tctctctctctcaatctatctctgtgttt-tgtgtgtgtgtg 597
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 336 ttggtgtgtgtgtgcatctctctctctctcaatctatctctgtgtttgtgtgtgtgtgtg 277
Query: 598 tgtgtgtgtgtgtgtgt 614
|||||||||||||||||
Sbjct: 276 tgtgtgtgtgtgtgtgt 260
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1016
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1006
Effective search space: 607624
Effective search space used: 607624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
