BAC Information

Click to search

BAC

Clone NameMSMg01-495K14
Chromosome11 (Build37)
Map Location 100,339,351 - 100,479,066
singlet/doubletdoublet
Overlap geneAcly, Ttc25, Cnp1, Dnajc7
Upstream geneKrt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11
Downstream geneNkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495K14.T7 (MSMg01no495_k14.b1)MSMg01-495K14.TJ (MSMg01no495_k14.g1)
ACCAG572652AG572653
length767796
length of high quality
(start - end)
306 (330 - 635)156 (85 - 240)
definitionCHROMAT_FILE: MSMg01no495_k14.b1 PHD_FILE: MSMg01no495_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:46 2005CHROMAT_FILE: MSMg01no495_k14.g1 PHD_FILE: MSMg01no495_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,339,351 - 100,339,656)(100,478,911 - 100,479,066)
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACACCGCCGCG
GAATTCCCGATTCTCCCCATAGCCAGATCAGNCAGACTTGGTAAAAAGGG
AAACTGTTAGTCTGAATCTATTTTTCTTAGCTAGTAATGGAAACTATTCC
CAGTAATAAAAGGAAAATAGATAAAGATAAGAAGAAAAGGTAAATAAGAG
CTGAGAATGATGTAGACCTCCATGTGCCACCCACCCAAACAATAACTAAA
AACTACTCACAGGGCAAGGAGTGTAGCAAGAAACCCTTGAAACTACAGCC
AACTCACCAATGAAGCCCATACTTCTTTCTAGCACAAAGATGCCATTGAG
GGCTCCAATGTCAACATATTCATCAGCTTCCTCCCTGAAACACACAAACA
ACCGGTTCTTTAAAAGTGAATCATGTGACCATCTTCTTAAAGAGACAGCA
CTACTTCCTCCCAGAGAGCAGTTCTAGTTCCAAAGCGGAAAAAGTGGCAG
AGCTGGAGGCGACTTTTAGCCTTCTTCTTACACCTCCACACACTTGCTAA
GTCCCCTCACAGTTGGGAGGAAACAGCAGAAGAAATCAGCTAGCCCTGGA
GCTGAGGCTCTGCCGCTCACCGGGTGAAGGAGCCACAGTTCCTGAGCATG
TCCACAAACGCAACGCCGATGAAGCCGTCCACATTCAGGATAAGATTTGG
CTTCTGAGAAGGCAAAGGGAAAAAAAAAGGGTTATCATTTCTTATTTTTT
TTTCCTGATGTCTTCCN
NNCCCCTATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGTCTGGGTTTTATAGAA
AGAAGCTAGACGTGGTGCTCACCATAATCCAGCACTTGGAGGCAGCGGCA
ATCGGACAAGGTCAAGGGCAGCCAGATATCCACAGTTTTAGGCTAGGCAG
GGGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGCCCTCCTCT
TTCCTCCTTTTTCCCCCTCCCCGCCCCTCCTTCTCCGCTCCCTCCCCCCT
TCCCCCCTCCCCGCTTTTTTTTTCTCTTCCCCTCCTTCCTTCCTTCCCCC
TTTCTCTTTTTTTTTTTCCTCTGCTTCCCCTGCCCGGCCTCCCCCTCTTC
TCTTCTTCTCCTTCTCCTTCTCCCCCCCTCGCGCCTTCTCCTTGTCCCCC
CCGCTTGTCTCCTTCCCACCTCTCCGGCCTTGACTCACTATGCGCCTCCA
CACCTTCCTCCCCCTTTCCCACGCTCTTTCTCTTTCTCCCCACTGTGCTC
CCTCTCCTCTCGCTCCTTCTCTCTATCTTTTTACCTCCTATTATTCTCTC
TTCTTCGTTCTCTTCTCCCCTCTTCCCCACCTCCCCTCCACCTCTCTGTT
TTTTCCTCCTCTTTTTGTTCCCGCCCCTTCTCTCTTCCTTCTTATGCCTT
CTTTGTCCCTTCCTCACCCTCCCCGTCCTCCCCCCTCGTGCCCCCTCCCC
TTCTCTCTTTCCTCTCTAGCCTGTTCCGCCCGCTCTGTCCTCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_k14.b1 MSMg01no495_k14.b1 CHROMAT_FILE:
MSMg01no495_k14.b1 PHD_FILE: MSMg01no495_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:46 2005
         (306 letters)



>mm_chr11_100339151_100339856
          Length = 706

 Score =  576 bits (298), Expect = e-169
 Identities = 304/306 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagcacaaagatgccattgagggctccaatgtcaacatattcatcagcttcctccctgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagcacaaagatgccattgagggctccaatgtcaacatattcatcagcttcctccctgaa 260

                                                                       
Query: 61  acacacaaacaaccggttctttaaaagtgaatcatgtgaccatcttcttaaagagacagc 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 acacacaaacaaccggttctttaaaaatgaatcatgtgaccatcttcttaaagagacagc 320

                                                                       
Query: 121 actacttcctcccagagagcagttctagttccaaagcggaaaaagtggcagagctggagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actacttcctcccagagagcagttctagttccaaagcggaaaaagtggcagagctggagg 380

                                                                       
Query: 181 cgacttttagccttcttcttacacctccacacacttgctaagtcccctcacagttgggag 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgacttttagccttcttcttacacctccacacacttgctaagtcccctcacagttgggag 440

                                                                       
Query: 241 gaaacagcagaagaaatcagctagccctggagctgaggctctgccgctcaccgggtgaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaacagcagaagaaatcagctagccctggagctgaggctctgccgctcaccgggtgaag 500

                 
Query: 301 gagcca 306
           ||||||
Sbjct: 501 gagcca 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no495_k14.g1 MSMg01no495_k14.g1 CHROMAT_FILE:
MSMg01no495_k14.g1 PHD_FILE: MSMg01no495_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:46 2005
         (156 letters)



>mm_chr11_100478749_100479304
          Length = 556

 Score =  294 bits (152), Expect = 2e-84
 Identities = 155/156 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgggttttatagaaagaagctagacgtggtgctcaccataatccagcacttggaggca 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tctgggttttataaaaagaagctagacgtggtgctcaccataatccagcacttggaggca 259

                                                                       
Query: 61  gcggcaatcggacaaggtcaagggcagccagatatccacagttttaggctaggcaggggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gcggcaatcggacaaggtcaagggcagccagatatccacagttttaggctaggcaggggt 199

                                               
Query: 121 gtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgt 156
           ||||||||||||||||||||||||||||||||||||
Sbjct: 198 gtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgt 163


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)