BAC Information

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BAC

Clone NameMSMg01-495K18
Chromosome11 (Build37)
Map Location 61,343,912 - 61,344,233
singlet/doubletsinglet
Overlap geneEpn2
Upstream geneAlkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9
Downstream geneGrap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495K18.T7 (MSMg01no495_k18.b1)MSMg01-495K18.TJ (MSMg01no495_k18.g1)
ACCAG572660AG572661
length738738
length of high quality
(start - end)
325 (321 - 645)237 (80 - 316)
definitionCHROMAT_FILE: MSMg01no495_k18.b1 PHD_FILE: MSMg01no495_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:47 2005CHROMAT_FILE: MSMg01no495_k18.g1 PHD_FILE: MSMg01no495_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTATAATTTGGGTCGGAAAGATTCACAATCGGACCCGACCGNGGAANNN
CNAGNGTGCAAAACAGGGGCGNANANAGAGGCTGTGACAGGGAGCCTGAG
TAGGACACTGTCTGCTGTGGGAACAGGTACCAAGAGCTCTGTTTGGATAT
GTCCTTTGCTTGCTCTTCAAATGAAGATGAAATTTGCCATTCCGACTGTT
TAACAAAACTGGAATATTTAACAAAACAAAACATAAACCCCACACTTTTA
CAGAGCTGTATAACTGTTGTTACTAGGTAGAATGGAACTTGTTTCCATTA
CTCCAGAAAGATTCTTGTTTCAGCTCCTAGCCACCAGCTTGCTATTATTA
TGCCTTGGTTCATGAAGACTTGTTTGATGTGGACATTATCATATTATTAG
CAAAGTCACATTACTGTGGCCTTCATTTGTTGGCAGCATGTCTGCAATAT
AGTAGGTGTTTAGTCTTTTCCTGGCCAGAAGTATCCCCTGTGGATGTGGC
AACTCATGGTACACTCTCCTCCCGTTGGACATTTGCATTGTGTTTAGTTC
CTGGCCATTGTGAATCTAATTTTCAAAAGAGAAGATTGAACTAAAGCCCA
AATGATCACTATCTGTTTTTACATGGTGGCGAGGATTAAAGCTATCCTGA
ATAAGGGTGCTGCTCATGGCCGGCTCCCTGAGGCTGGTCCCTGTGCCTGT
TCTCTGTGGACCTGCCCACTCTCGGGTCCCACACAGTG
NCCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATTCACTCTATCACACTGGCCTGTGGG
CATATCTGTGGGGACTGATGTGGGAGGGACCAGCTCACCATGGACGGTGT
CAACCTGATGTGGGAGGGACCAGCTCACCATGGACGGTGTCAACCTGATG
TGGGAGGGACCAGCTCACCATGGGCGGTGTCAACCTGATGTGGGAGGGAC
CAGCTCACCGTGGGCGGTGTCAACCTGATGTGGGAGGGTCCAGCTCACCG
TGGGCGGTGTCAACCTGATGTTTGAGGGACCAGCTCACCATGGGCGGTGT
CAACCTGATGTGGGAGGGACCAGCTCACCGTGGGCGGTGTCAACCTGATG
TGGGAGGGTCCAGCTCACCGTGGGCGGTGTCAACCTGATGTGGGAGGGAC
CAGCTCACCATGGGCGGTGTCAACCTGATGTGGGAGGGACCAGCTCACCG
TGGGCGGTGTCAACCTGATGTGGGAGGGTCCAGCTCACCGTGGGCGGTGT
CAACCTGAGGCAGGTGGTTTCAGTTCCCACCTCCAGGTTTCTGCCTTAAG
GTCCTGCCTTGGTTTCCATAAATGGGTTGTGATTTAGGACATGAAAGCCC
AAGAAACCCTCTCCTCCCCAAGTCGCTTTTGGTTGGAGATTCTGTCACAG
CAAAAGACTGGTGACATTATTTAAATTTCTGACTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_k18.b1 MSMg01no495_k18.b1 CHROMAT_FILE:
MSMg01no495_k18.b1 PHD_FILE: MSMg01no495_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:47 2005
         (325 letters)



>mm_chr11_61343709_61344433
          Length = 725

 Score =  607 bits (314), Expect = e-178
 Identities = 320/322 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ctcctagccaccagcttgctattattatgccttggttcatgaagacttgtttgatgtgga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ctcctagccaccagcttgctattattatgccttggttcatgaagacttgtttgatgtgga 466

                                                                       
Query: 64  cattatcatattattagcaaagtcacattactgtggccttcatttgttggcagcatgtct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cattatcatattattagcaaagtcacattactgtggccttcatttgttggcagcatgtct 406

                                                                       
Query: 124 gcaatatagtaggtgtttagtcttttcctggccagaagtatcccctgtggatgtggcaac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gcaatatagtaggtgtttagtcttttcctggccagaagtatcccctgtggatgtggcaac 346

                                                                       
Query: 184 tcatggtacactctcctcccgttggacatttgcattgtgtttagttcctggccattgtga 243
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tcatggtacactctcctcccattggacatttgcattgtgtttagttcctggccattgtga 286

                                                                       
Query: 244 atctaattttcaaaagagaagattgaactaaagcccaaatgatcactatctgtttttaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 atctaattttcaaaagagaagattgaactaaagcccaaatgatcactatctgtttttaca 226

                                 
Query: 304 tggtggcgaggattaaagctat 325
           |||||| |||||||||||||||
Sbjct: 225 tggtggtgaggattaaagctat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)