BAC Information

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BAC

Clone NameMSMg01-495O13
Chromosome11 (Build37)
Map Location 12,521,579 - 12,521,945
singlet/doubletsinglet
Overlap genenone
Upstream geneIkzf1, Fignl1, Ddc, Grb10, Cobl
Downstream geneLOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495O13.T7 (MSMg01no495_o13.b1)MSMg01-495O13.TJ (MSMg01no495_o13.g1)
ACCAG572841AG572842
length710720
length of high quality
(start - end)
615 (87 - 701)51 (83 - 133)
definitionCHROMAT_FILE: MSMg01no495_o13.b1 PHD_FILE: MSMg01no495_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:04 2005CHROMAT_FILE: MSMg01no495_o13.g1 PHD_FILE: MSMg01no495_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACTCTTTTNNTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTCAACTTTATCCAAACCGAATGGCTGAGAAGCA
CCTAAAAAATGTTCAATATCCTTAATCATCAGAGAAATGCAAATCAAAAC
CACTCTGAGACCATACATCATGACCAATAAGCAAGTTGTGAGGAAAGGGT
TTATTCAGCTTACACTTCCATACTGACTGCTGTTCATCACCAAGGAAGAC
AGGACTGGAACTCCAGCAGGGTGGGAAGCAGGAGCTGATGCAGAGGCCAT
GAAGAGATGTTACTTACTGGCTTGCTTTTCTCTGGCTTGCTCATCCTGCT
CTCTTATAGGACCAAGATTACCAGCGCAAGGATGGTCCCACCCACAAGGG
GCCCTTCCTCCTTGATCACTAATTGAGAAAATGCCTTACAGCTGGATCTC
ATGGAGGCATTTCCCCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCT
TGTGTCAAGTTGACACTCAAAACCAGCCAGTACACATAGCATTCAGGGTA
TATGATGATTGATTCTGATTTTGTTATATTAATAAAACAGGAAGCAAAAT
TCAGATAAAAAGACATAAAACTCAGTATGAAAGTATAAGTATGTATGAAC
TTGCAGACTAAGAAGGCACAGACAAAGCAACTATAATTTTTAAAGAGATC
AACCTAATTT
ACTATTTATCGATGAAGNTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGCTGCACAACCCTTAC
AGTGGAGAAGACCGGCGGGGATATGCTGAAGTAGACCTCAATGAAAGGGA
GGAGTCACTGAGCAAAGGACTGAGCATTCAGGAGGTCATGCCCACTGTCA
GTCTTTCCTGTCCCCATGCTGTCTGGGTCATGACAACCATGCACATCTAA
TACAACTATGCCAAGTTCATTACATCGCTTTACTACCTGGGTAAGTAGAT
TTCCGAGGTCCCTCCGAATCTATTTTTGTATCCTTACCTGCTGCAAATTC
AGCATGTGCTTTAGGATCCACAGGCATTTCAGGTGACAGGCCAGCTACCA
GTTACCTCAGCTACTATCTCAAATGAGTGAAGACTTCAGAGACTACTCAG
AGATAAAGTCTGTCAAGGGGAATATTCATAACTCCTTCCTGGACATAAAG
GGAGAGAGTGTATCAAGTTACCTGCTCATGCAGCACGTTGAGGGAGGGTT
GTGCTTTACGGTATATTGCAAAAGGTACTCTTCGAGTCCTTAAGATGAAT
CTCATTTAGTCATATCGGGTATTTCACAGGTCATGATAAATATGACCTTC
AGATTTGCTTTAAAGGTTTTAAGGTTGCATTCTTGTCCTTCCTCCCTCCT
TGGACTCCTGTTTTATAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_o13.b1 MSMg01no495_o13.b1 CHROMAT_FILE:
MSMg01no495_o13.b1 PHD_FILE: MSMg01no495_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:04 2005
         (615 letters)



>mm_chr11_12520931_12521945
          Length = 1015

 Score =  694 bits (359), Expect = 0.0
 Identities = 365/367 (99%)
 Strand = Plus / Minus

                                                                        
Query: 249  gcttgctcatcctgctctcttataggaccaagattaccagcgcaaggatggtcccaccca 308
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1015 gcttgctcatcctgctctcttataggaccaagattaccagcccaaggatggtcccaccca 956

                                                                        
Query: 309  caaggggcccttcctccttgatcactaattgagaaaatgccttacagctggatctcatgg 368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955  caaggggcccttcctccttgatcactaattgagaaaatgccttacagctggatctcatgg 896

                                                                        
Query: 369  aggcatttccccaactgaagctcctttctctgtgataactccagcttgtgtcaagttgac 428
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895  aggcattttcccaactgaagctcctttctctgtgataactccagcttgtgtcaagttgac 836

                                                                        
Query: 429  actcaaaaccagccagtacacatagcattcagggtatatgatgattgattctgattttgt 488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835  actcaaaaccagccagtacacatagcattcagggtatatgatgattgattctgattttgt 776

                                                                        
Query: 489  tatattaataaaacaggaagcaaaattcagataaaaagacataaaactcagtatgaaagt 548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775  tatattaataaaacaggaagcaaaattcagataaaaagacataaaactcagtatgaaagt 716

                                                                        
Query: 549  ataagtatgtatgaacttgcagactaagaaggcacagacaaagcaactataatttttaaa 608
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715  ataagtatgtatgaacttgcagactaagaaggcacagacaaagcaactataatttttaaa 656

                   
Query: 609  gagatca 615
            |||||||
Sbjct: 655  gagatca 649


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)