BAC Information

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BAC

Clone NameMSMg01-496F06
Chromosome11 (Build37)
Map Location 35,586,030 - 35,736,192
singlet/doubletdoublet
Overlap genePank3, LOC666733, AI595406, Rars, Wwc1
Upstream geneDock2, Ccdc99, LOC100038976, Slit3, LOC100039006
Downstream geneLOC636532, Odz2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496F06.T7 (MSMg01no496_f06.b1)MSMg01-496F06.TJ (MSMg01no496_f06.g1)
ACCAG573160AG573161
length757755
length of high quality
(start - end)		617 (54 - 670)593 (84 - 676)
definitionCHROMAT_FILE: MSMg01no496_f06.b1 PHD_FILE: MSMg01no496_f06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:37 2005CHROMAT_FILE: MSMg01no496_f06.g1 PHD_FILE: MSMg01no496_f06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,735,690 - 35,736,192)(35,586,030 - 35,586,622)
sequence
NNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCAGGTTTGGGAGTGGCTAAATGGAGAAGCTTCTGAGT
AAACGAGCCAAACCAGAGCCGGGACCTTGGGAGACTCCAGGGTCTGAGAG
CAAGAAAGCAGACACAGGTGCTCTGAGAGAAGCGAGCAGGAGAAAGGGAG
AGGGGGTATTTTGGAGAAACGGGCATAGGCCTTCCCAGAGCAAATGTCAT
TCCCTTCAGAAAGCAAATACAGAGAGCCAAATCCCAAACACGTGCGATCT
CTCAGCCCGCCTGCTTTAATTTCTATCGGGGGTTCGGGGCACAAGTGGCT
TCCACAGTGGGTGGAGGTCAGAGCGTAATTCTCAGGAGTTGGTTCTCTTC
TGCCACCTTGTGGGATCCGGGAATTGACCTCGGGTTATCAGAACTGTGCA
AGTGCTTGTGCCCACAGCACCATTTCACCAGCCCACAGGAGGGTGCTTTC
CCCAGTCCCTGCTTCTCAGGAAGGGGACGGGGTGCAGTACAAGGCTTCTT
ACAGCTATTTAAGCCTGAGTCATTAGTTTGCTATTGTTCCCATGCCATAT
TATGGAAATATGGGAATATAGCCCAACGCACCACAGCTAATGGCTAATAG
CATTCATGTGCTAGGCAGAGCCCTCTTTTAGGAGGTCATCACTGTGTGTG
TCGTCTCCTTATACACNANNGAGTGGACGTTTGGTGCCTGTGCAGACAGG
TGTTTGN

NNNNAATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAACATTGGGGTTTAC
CAGTGTATTACCCATCTTAAGTTGCTAGAAAAGTCAGAAGCTGGTGATTT
AGACCATTTGCTACATGATAAAAGTGGCTCATGATTGAGTTTGTCTTCTG
TGCTCTTGTTGCCTTCCTCAAGCCCTTTGAATGTGGTTTTAAAAATATTT
ATGTTTAGTTTATGTGGATATGTGTAGGTGAGTGCATCTGTGGGGTTAAG
CTGTCAGAGCAGCTCTTGAGCTGGGTTGTTAAGGCTTTGGGAGCCACCTG
AAGTGGGTGCTGGGAATCTGAACTCGGGTCCTCTAGAAAATCAAAACCTG
CTCTTAACAGCTGAGTTCTCTCTCCAGCCCCTGAGTACTGGTTATTTCCT
GGATTGAGGAAATGAATCCCAGAACACTGCTGAGTTGAAAAGATCTCTGC
AAAAGTTAGGTGTTGGGCTGCAAGACAGCTTAATAGCTTCATCACCAAGA
ATACAGTCCTTGGGACCTACATAGTGGAGAAAGAACTGACTCTTAGACCT
TGTCCTCTTGATCTCCACATTCAAGCTGTGACAGGCATGCCCTGCTGCAC
ATCTGCATAAACCAAATCAACGGAATGGGGTAGATCTCCCACCTCCCTCT
TTTAATTTGAGCTATTGGCAGAGTAATTCCTTTCAGGCAAATTTCTCCTG
ATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_f06.b1 MSMg01no496_f06.b1 CHROMAT_FILE:
MSMg01no496_f06.b1 PHD_FILE: MSMg01no496_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:37 2005
         (617 letters)



>mm_chr11_35735690_35736706
          Length = 1017

 Score =  942 bits (487), Expect = 0.0
 Identities = 499/503 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggtttgggagtggctaaatggagaagcttctgagtaaacgagccaaaccaga 64
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaattccaggagtgggagtggctaaatggagaagcttctgagtaaacgagccaaaccaga 444

                                                                       
Query: 65  gccgggaccttgggagactccagggtctgagagcaagaaagcagacacaggtgctctgag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gccgggaccttgggagactccagggtctgagagcaagaaagcagacacaggtgctctgag 384

                                                                       
Query: 125 agaagcgagcaggagaaagggagagggggtattttggagaaacgggcataggccttccca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agaagcgagcaggagaaagggagagggggtattttggagaaacgggcataggccttccca 324

                                                                       
Query: 185 gagcaaatgtcattcccttcagaaagcaaatacagagagccaaatcccaaacacgtgcga 244
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 323 gagcaaaggtcattcccttcagaaagcaaatacagagagccaaatcccaaacacctgcga 264

                                                                       
Query: 245 tctctcagcccgcctgctttaatttctatcgggggttcggggcacaagtggcttccacag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tctctcagcccgcctgctttaatttctatcgggggttcggggcacaagtggcttccacag 204

                                                                       
Query: 305 tgggtggaggtcagagcgtaattctcaggagttggttctcttctgccaccttgtgggatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tgggtggaggtcagagcgtaattctcaggagttggttctcttctgccaccttgtgggatc 144

                                                                       
Query: 365 cgggaattgacctcgggttatcagaactgtgcaagtgcttgtgcccacagcaccatttca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 cgggaattgacctcgggttatcagaactgtgcaagtgcttgtgcccacagcaccatttca 84

                                                                       
Query: 425 ccagcccacaggagggtgctttccccagtccctgcttctcaggaaggggacggggtgcag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  ccagcccacaggagggtgctttccccagtccctgcttctcaggaaggggacggggtgcag 24

                                  
Query: 485 tacaaggcttcttacagctattt 507
           |||||||||||||||||||||||
Sbjct: 23  tacaaggcttcttacagctattt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no496_f06.g1 MSMg01no496_f06.g1 CHROMAT_FILE:
MSMg01no496_f06.g1 PHD_FILE: MSMg01no496_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:37 2005
         (593 letters)



>mm_chr11_35585830_35586822
          Length = 993

 Score = 1139 bits (589), Expect = 0.0
 Identities = 592/593 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaacattggggtttaccagtgtattacccatcttaagttgctagaaaagtcagaagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaacattggggtttaccagtgtattacccatcttaagttgctagaaaagtcagaagctg 260

                                                                       
Query: 61  gtgatttagaccatttgctacatgataaaagtggctcatgattgagtttgtcttctgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgatttagaccatttgctacatgataaaagtggctcatgattgagtttgtcttctgtgc 320

                                                                       
Query: 121 tcttgttgccttcctcaagccctttgaatgtggttttaaaaatatttatgtttagtttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttgttgccttcctcaagccctttgaatgtggttttaaaaatatttatgtttagtttat 380

                                                                       
Query: 181 gtggatatgtgtaggtgagtgcatctgtggggttaagctgtcagagcagctcttgagctg 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 gtggatatgtgtaggtgagtgcatctgtggggtcaagctgtcagagcagctcttgagctg 440

                                                                       
Query: 241 ggttgttaaggctttgggagccacctgaagtgggtgctgggaatctgaactcgggtcctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggttgttaaggctttgggagccacctgaagtgggtgctgggaatctgaactcgggtcctc 500

                                                                       
Query: 301 tagaaaatcaaaacctgctcttaacagctgagttctctctccagcccctgagtactggtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagaaaatcaaaacctgctcttaacagctgagttctctctccagcccctgagtactggtt 560

                                                                       
Query: 361 atttcctggattgaggaaatgaatcccagaacactgctgagttgaaaagatctctgcaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttcctggattgaggaaatgaatcccagaacactgctgagttgaaaagatctctgcaaa 620

                                                                       
Query: 421 agttaggtgttgggctgcaagacagcttaatagcttcatcaccaagaatacagtccttgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agttaggtgttgggctgcaagacagcttaatagcttcatcaccaagaatacagtccttgg 680

                                                                       
Query: 481 gacctacatagtggagaaagaactgactcttagaccttgtcctcttgatctccacattca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacctacatagtggagaaagaactgactcttagaccttgtcctcttgatctccacattca 740

                                                                
Query: 541 agctgtgacaggcatgccctgctgcacatctgcataaaccaaatcaacggaat 593
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agctgtgacaggcatgccctgctgcacatctgcataaaccaaatcaacggaat 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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