Query= MSMg01no496_g24.b1 MSMg01no496_g24.b1 CHROMAT_FILE:
MSMg01no496_g24.b1 PHD_FILE: MSMg01no496_g24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:46 2005
(555 letters)
>mm_chr11_8694698_8695652
Length = 955
Score = 988 bits (511), Expect = 0.0
Identities = 541/551 (98%)
Strand = Plus / Plus
Query: 5 gaattcacacacctccaggcttctcatttctcagcttgccttgtgggttttccttcagtg 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacacaccaacaggcttctcatttctcagcttgccttgtgggttttccttcagtg 264
Query: 65 tcttctgtcatctgcttcagcatccacaaaacctgacaggctgacagctgatgggacgca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcttctgtcatctgcttcagcatccacaaaacctgacaggctgacagctgatgggacgca 324
Query: 125 gtgaaggacatgagcctgggacacagtgaaggacatgagcctgggtcgcagtgaacggca 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 atgaaggacatgagcctgggacacagtgaaggacatgagcctgggtcgcagtgaatagca 384
Query: 185 tgagccttctttgttgtagtatgcaggaaggcagtgtcaagggcatgtggaccttagttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgagccttctttgttgtagtatgcaggaaggcagtgtcaagggcatgtggaccttagttg 444
Query: 245 tggggagagaccctagtgtggctgcagtgacagtggtatttttgatttccagatggtgct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggggagagaccctagtgtggctgcagtgacagtggtatttttgatttccagatggtgct 504
Query: 305 gagactacccagccctagaatgagagcaggaatatgtggccttgacctccatccagcttg 364
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 505 gagactacccagccctagaacgagagcagggatatgtggccttgacctccatccagcttg 564
Query: 365 gctgggcacactgactcacagagaagtctccagatcatgggttgagcttcccttatgtcc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctgggcacactgactcacagagaagtctccagatcatgggttgagcttcccttatgtcc 624
Query: 425 acactacccttcccttggcacccacagacccagtgtgtcagcgagtgtaagtttccctgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acactacccttcccttggcacccacagacccagtgtgtcagcgagtgtaagtttccctgc 684
Query: 485 agaatgctcgtagacaggagcacctgactgtgggaacttcccagtagctattcctgcctg 544
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agaatgctagtagacaagagcacctgactgtgggaacttcccagtagctattcctgcctg 744
Query: 545 ctgcccgttgg 555
|||||| ||||
Sbjct: 745 ctgcccattgg 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_g24.g1 MSMg01no496_g24.g1 CHROMAT_FILE:
MSMg01no496_g24.g1 PHD_FILE: MSMg01no496_g24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:46 2005
(500 letters)
>mm_chr11_8873346_8874245
Length = 900
Score = 899 bits (465), Expect = 0.0
Identities = 492/501 (98%), Gaps = 2/501 (0%)
Strand = Plus / Minus
Query: 1 agacctcagcctgcctgcctgtgtggcttaggggataagcacagaacaggcaaaggaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 agacctcagcctgcctgcctgtgtggcttaggggataagcacagaacaggcaaaggaggg 641
Query: 61 aaatgtggggaccctcgcatgtccacaggaatgttctcctgccttgaagggctcccatct 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 640 aaatgtggggaccctcgcatgtccacaggagtgttctcctgccttgaagggctcccatct 581
Query: 121 ctattcacatttctagttgcctaagtgcccatcatcagggtcctcctgcaacagtttcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ctattcacatttctagttgcctaagtgcccatcatcagggtcctcctgcaacagtttcca 521
Query: 181 gcaagccagtgatggaagtcctgtgttcttgggagccagaggctcagaagtacagacttt 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gcaagccagtgaaggaagtcctgtgttcttgggagccagaggctcagaagtacagacttt 461
Query: 241 ccagcccccatctcccagtacaaggagctacgcgtggggaggggaaactggtggctgtgg 300
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 460 ccagcccccagctcccagtacaaggagctacacgtggggaggggaaactggtggctgtgg 401
Query: 301 gtcaggatagcattgtataaaaacagcaggca-gtgattcatgaaaaagactgattttgg 359
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 400 gtcaggatagcattgtataaaaacagcagg-aggtgattcatgaaaaagactgattttgg 342
Query: 360 ctcatggtatcagtgatgtagggacaatgtcttttacctgtatttctgtaactagattag 419
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctcatggtctcagtgatgtggggacaatgtcttttacctgtatttctgtaactagattag 282
Query: 420 ttgcactccagttgccaacctcagcatccagggtgctgatcccagtttctatgcagctgg 479
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttgcactccacttgccaacctcagcatccagggtgctgatcccagtttctatgcagctgg 222
Query: 480 cctcagtctctaaagtaatgg 500
|||||||||||||||||||||
Sbjct: 221 cctcagtctctaaagtaatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
