BAC Information

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BAC

Clone NameMSMg01-497F03
Chromosome11 (Build37)
Map Location 50,534,293 - 50,601,301
singlet/doubletdoublet
Overlap geneAdamts2
Upstream geneLOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1
Downstream geneZfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497F03.T7 (MSMg01no497_f03.b1)MSMg01-497F03.TJ (MSMg01no497_f03.g1)
ACCAG573917AG573918
length760756
length of high quality
(start - end)		713 (48 - 760)578 (79 - 656)
definitionCHROMAT_FILE: MSMg01no497_f03.b1 PHD_FILE: MSMg01no497_f03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:58 2005CHROMAT_FILE: MSMg01no497_f03.g1 PHD_FILE: MSMg01no497_f03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,600,597 - 50,601,301)(50,534,293 - 50,534,873)
sequence
NCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCATAATTACGAGCAGCCTCTGGTTCTACACCCAGGGGACCTG
GGATCCAGTTTTGCTTGGACACAAAGTTCAGTGTAACCTTGTAACTGGTT
TTTGAGCTCTCCGGTGTGAGAATTTCAGCACATCTGCAGAGATTAACACA
TCTGATGGCATAACTGTGAACGTCATTCAAATAGACAAAATGGAAATGTC
TAGAGAGGAGACTTTGCCCAGGGTCACTAAGAGGGGTGTAGAAAGCAGTT
CCCTGACGTGTGGGTCCATGCCCACTCATGGCTGACATGGAGACGGAGAC
CATGGCAGGGAAAGAGGCTGCTCGGAGCATAGACTGAAGTGTACAGGTGG
AGCTTGAGCGTCCCAGGTCTCCCACACACGGGCTGGGGCTGTGTGCACCC
GCAGGGGGGCCTGTGCACCCGAGAACTGGGGCCGTGGGCAGCACTCACCA
GCACGGTGATGGTTCCGTGGAGTGGGCCTATGGTCTGCAGCGTCTCCCTC
TCGTCCTCGTTCCTGTATTCCCACTCCACACCCATGGCAATGAAGGATCT
AGAATTGGGGTCCAAGTGGTTCTCTTCATTTAAGATGAACTTGCCTGTCT
CCAGGTTCTTGACAGCTGAGAATGGTAAAGGGGAGCACACAGTCACTGCA
GCACATGGCTACTGGTCTTACTAGTTGGCAGGGAGGCCATAGCTGTGCTT
CCTTCCCTCA

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTGATCCCAATGAGTCCAAG
ACATCGAAAAGGCAGCAGTGAGGCCTGTCCAAGGGTCGCGCGATATGGCC
ATTCATAAAAGCATGTCTCTGCTTCTGCGGGTGCCACAGTGCCAACCTCA
GTTTCACGCTGGCTAAAATCAGGTGGGGCTGACTGTGCCTCTGGGTCACT
GCAGTTTGGTTCTGAGACAATGTCTAAACCAAAGCCAGAGGCGCTCATGC
CTGCAGCTGCCTGTTGTCCACTGGGGCCAAAGACAGTTGCTGCCTCAGAG
TGACCTGTCAGTCTCTGAGGTCAGTACTGCTGCTGGAGTCAGACAGGGCT
GTCCTGCACTGCTGGCCCCTGCGGTATCTGCTAGGCTTATTTCTACATCT
GTCCGACAGAAGCCTTGTTCACACCTACAGGGCAGCTGTGAATAACAAAC
ACAGAAGCATCAGGTTTAACAAGACACTTGTAAAGCCCCCTGTCTTGCTG
CTTTCTGTTACTAATAGCACTCTGGTTCCTGGTTGAGGAACACAGCTGCC
GTTGGCCTTCTGGTTGGCAAAGTGCCCAGCTGGGGCAGGGCATCACACGG
CCAGAGACAGGGGACCTTCAAGGAACCAAACCAGCATGGCTTTTGGAGCA
GCTTCCCTATGTGAATCCATGTGTGACACGTGTGGGTGAATCCATTCATG
AGGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_f03.b1 MSMg01no497_f03.b1 CHROMAT_FILE:
MSMg01no497_f03.b1 PHD_FILE: MSMg01no497_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:58 2005
         (713 letters)



>mm_chr11_50600390_50601502
          Length = 1113

 Score = 1263 bits (653), Expect = 0.0
 Identities = 692/705 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttcccataattacgagcagcctctggttctacacccaggggacctgggatccagttttgc 67
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 ttcccataactaggagcagcctctggttctacacccaggggacctgggatccagttttgc 853

                                                                       
Query: 68  ttggacacaaagttcagtgtaaccttgtaactggtttttgagctctccggtgtgagaatt 127
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 852 ttggacacaaagttcagtgtaaccttgtaactggtttttgagctctcaggtgtgagaatt 793

                                                                       
Query: 128 tcagcacatctgcagagattaacacatctgatggcataactgtgaacgtcattcaaatag 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 tcagcacatctgcagagattaacacatctgatggcataactgtgaacgtcattcaaatag 733

                                                                       
Query: 188 acaaaatggaaatgtctagagaggagactttgcccagggtcactaagaggggtgtagaaa 247
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 732 acaaaatggaaatgtctagagaggagattttgcccagggtcactaagaggggtgtagaaa 673

                                                                       
Query: 248 gcagttccctgacgtgtgggtccatgcccactcatggctgacatggagacggagaccatg 307
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gcaggtccctgacgtgtgggtccatgcccactcatggctgacatggagacggagaccatg 613

                                                                       
Query: 308 gcagggaaagaggctgctcggagcatagactgaagtgtacaggtggagcttgagcgtccc 367
           ||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||
Sbjct: 612 gcagggaaagaggctgctcagagcatagacagaagcgtacaggtggagcttgagcgtccc 553

                                                                       
Query: 368 aggtctcccacacacgggctggggctgtgtgcacccgcaggggggcctgtgcacccgaga 427
           ||||||||||| ||||||||||| |||||||||||||||||||| ||||||| |||||||
Sbjct: 552 aggtctcccacgcacgggctgggactgtgtgcacccgcagggggacctgtgctcccgaga 493

                                                                       
Query: 428 actggggccgtgggcagcactcaccagcacggtgatggttccgtggagtgggcctatggt 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 actggggccgtgggcagcactcaccagcacggtgatggttccgtggagtgggcctatggt 433

                                                                       
Query: 488 ctgcagcgtctccctctcgtcctcgttcctgtattcccactccacacccatggcaatgaa 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctgcagcgtctccctctcgtcctcgttcctgtattcccactccacacccatggcaatgaa 373

                                                                       
Query: 548 ggatctagaattggggtccaagtggttctcttcatttaagatgaacttgcctgtctccag 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggatctagaattggggtccaagtggttctcttcatttaagatgaacttgcctgtctccag 313

                                                                       
Query: 608 gttcttgacagctgagaatggtaaaggggagcacacagtcactgcagcacatggctactg 667
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gttcttgacagctgagaatggtaaaggggagcacacagtcactgcagcacatggctactg 253

                                                        
Query: 668 gtcttactagttggcagggaggccatagctgtgcttccttccctc 712
           |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 252 gtcttactagttggcagggaggccatagctgtgcttccctccctc 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1113
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1103
Effective search space:   775409
Effective search space used:   775409
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no497_f03.g1 MSMg01no497_f03.g1 CHROMAT_FILE:
MSMg01no497_f03.g1 PHD_FILE: MSMg01no497_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:58 2005
         (578 letters)



>mm_chr11_50534093_50535073
          Length = 981

 Score = 1077 bits (557), Expect = 0.0
 Identities = 574/581 (98%), Gaps = 3/581 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgatcccaatgagtccaagacatcgaaaaggcagcagtgaggcctgtccaagggtcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgatcccaatgagtccaagacatcgaaaaggcagcagtgaggcctgtccaagggtcg 260

                                                                       
Query: 61  cgcgatatggccattcataaaagcatgtctctgctt---ctgcgggtgccacagtgccaa 117
           ||| ||||||||||||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 261 cgcaatatggccattcataaaagcatgtctctgcttctcctgcgggtgccacagtgccaa 320

                                                                       
Query: 118 cctcagtttcacgctggctaaaatcaggtggggctgactgtgcctctgggtcactgcagt 177
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 cctcagtttcacgctggctaaaatcaggtggggctgacggtgcctctgggtcactgcagt 380

                                                                       
Query: 178 ttggttctgagacaatgtctaaaccaaagccagaggcgctcatgcctgcagctgcctgtt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggttctgagacaatgtctaaaccaaagccagaggcgctcatgcctgcagctgcctgtt 440

                                                                       
Query: 238 gtccactggggccaaagacagttgctgcctcagagtgacctgtcagtctctgaggtcagt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtccactggggccaaagacagttgctgcctcagagtgacctgtcagtctctgaggtcagt 500

                                                                       
Query: 298 actgctgctggagtcagacagggctgtcctgcactgctggcccctgcggtatctgctagg 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actgctgctggagtcagacagggctgtcctgcactgctggcccctgcggtatctgctagg 560

                                                                       
Query: 358 cttatttctacatctgtccgacagaagccttgttcacacctacagggcagctgtgaataa 417
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgtttctacatctgtccgacagaagccttgttcacacctacagggcagctgtgaataa 620

                                                                       
Query: 418 caaacacagaagcatcaggtttaacaagacacttgtaaagccccctgtcttgctgctttc 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaacacagaagcatcaggtttaacaagacacttgtaaagccccctgtcttgctgctttc 680

                                                                       
Query: 478 tgttactaatagcactctggttcctggttgaggaacacagctgccgttggccttctggtt 537
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 681 tgttactaatagcactctggttcccggttgaggaacacagctgccgttggccttctggtt 740

                                                    
Query: 538 ggcaaagtgcccagctggggcagggcatcacacggccagag 578
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggcaaagtgcccagctggggcagggcatcacacggccagag 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 981
Length adjustment: 10
Effective length of query: 568
Effective length of database: 971
Effective search space:   551528
Effective search space used:   551528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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