Query= MSMg01no497_i12.b1 MSMg01no497_i12.b1 CHROMAT_FILE:
MSMg01no497_i12.b1 PHD_FILE: MSMg01no497_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:15 2005
(540 letters)
>mm_chr11_72749256_72750201
Length = 946
Score = 884 bits (457), Expect = 0.0
Identities = 506/543 (93%), Gaps = 35/543 (6%)
Strand = Plus / Plus
Query: 1 ctattttaggaggttctagaggcttcaggaagtagggcctagctggagggtgccggtcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctattttaggaggttctagaggcttcaggaagtagggcctagctggagggtgccggtcac 260
Query: 61 taaggggccttggggctttcttttttaaatctattttgtctcaggcctctctctct--tt 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 taaggggccttggggctttcttttttaaatctattttgtctcaggcctctctctctcttt 320
Query: 119 ccttcctaaggtaaacagccctctcctccacatagtccagttgccatgatgctctgcctc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttcctaaggtaaacagccctctcctccacatagtccagttgccatgatgctctgcctc 380
Query: 179 atagaagcctaggagcatggacccaaggcccatggcttcaactctctgaagctaaaactc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagaagcctaggagcatggacccaaggcccatggcttcaactctctgaagctaaaactc 440
Query: 239 t----tatgttatttctgtcaggtatatgggggcataatgatcaggtgaccaatatagaa 294
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcttatgttatttctgtcaggtatatgggggcataatgatcaggtgaccaatatagaa 500
Query: 295 tggcaggtcactgcctgctttagttagggttttattgttgtggacaaacaccatgaccaa 354
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 501 tggcaggtcactgcctgctttagttagcgttttattgttgtggacaaacacca----ca- 555
Query: 355 ggcaacttttttttttttttttttttttgctttaacataatttttaatggtcccatattt 414
|| |||||||||||||||||||||||||||||||||
Sbjct: 556 ------------------------ttatgctttaacataatttttaatggtcccatattt 591
Query: 415 tctggggatccagaaaagaatgtattctctttttttaaaattaggtattttcctcattta 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tctggggatccagaaaagaatgtattctctttttttaaaattaggtattttcctcattta 651
Query: 475 catttccaatgctatcccaaaagtcccccataccctttccccccactcccccccactccc 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 catttccaatgctatcccaaaagtcccccataccctttccccccactcccccccactccc 711
Query: 535 cta 537
|||
Sbjct: 712 cta 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 946
Length adjustment: 10
Effective length of query: 530
Effective length of database: 936
Effective search space: 496080
Effective search space used: 496080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_i12.g1 MSMg01no497_i12.g1 CHROMAT_FILE:
MSMg01no497_i12.g1 PHD_FILE: MSMg01no497_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:15 2005
(297 letters)
>mm_chr11_72935933_72936629
Length = 697
Score = 526 bits (272), Expect = e-154
Identities = 292/300 (97%), Gaps = 4/300 (1%)
Strand = Plus / Minus
Query: 1 acagagatccatctgcctctgcctcctgagtgctggcattaatgccctgctagccatcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 acagagatccatctgcctctgcctcctgagtgctggcattaatgccctgctagccatcat 414
Query: 61 cttggtgaagatggttt---tccccccattttttttttctgatagacctggccagtctct 117
||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 413 ctttgtgaagatggtttcccccccccctttttttttttctgatagacctggccagtctct 354
Query: 118 cagtgttctggacccacgctcagcactttcctcaagttgagttcaaccttctttagggaa 177
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cagtattctggacccacgctcagcactttcctcaagttgagttcaaccttctttagggaa 294
Query: 178 agaggctgtaggaggtgcgctgactaatttcttgtcaacttgacacaagctagagttc-t 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 293 agaggctgtaggaggtgcgctgactaatttcttgtcaacttgacacaagctagagttctt 234
Query: 237 ttttttgcttggttttggtttggtttggttttggtttgtgtgtgtgtgtgtgtgtgtgtg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ttttttgcttggttttggtttggtttggttttggtttgtgtgtgtgtgtgtgtgtgtgtg 174
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space: 198144
Effective search space used: 198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
