MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-497I18
Chromosome	11 (Build37)
Map Location	52,587,048 - 52,587,698
singlet/doublet	singlet
Overlap gene	Fstl4
Upstream gene	Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
Downstream gene	LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Sar1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66397 MGI:1913647
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Phf15 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76901 MGI:1924151
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D11Ertd497e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52626 MGI:1261797
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ube2b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22210 MGI:102944
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cdkl3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:213084 MGI:2388268
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040437 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040437
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs

name	Ppp2ca (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19052 MGI:1321159
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Olfr1373 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:211472 MGI:3031207
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Olfr1372-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:257871 MGI:3031206
definition	gene_synonym : GA_x5J8B7TR6JS-3-632; MGC67752; MOR256-54P; NP_TR6JSE50FPA note : olfactory receptor 1372, pseudogene 1 pseudo : _no_value

name	Olfr1371 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:276865 MGI:3031205
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Skp1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21402 MGI:103575
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tcf7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21414 MGI:98507
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vdac1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22333 MGI:106919
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9530068E07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:213673 MGI:2654705
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667659 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667659
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs

name	LOC667667 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667667
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100040523 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040523
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	Fstl4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320027 MGI:2443199
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC623205 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:623205
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 88 ESTs, 2 Proteins

name	Hspa4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15525 MGI:1342292
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zcchc10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67966 MGI:1196228
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aff4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:93736 MGI:2136171
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040576 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040576
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Leap2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:259301 MGI:2672795
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Uqcrq (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22272 MGI:107807
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gdf9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14566 MGI:95692
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Shroom1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71774 MGI:1919024
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	ENSMUSG00000049427 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:432561 MGI:3642517
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Ankrd43 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237761 MGI:2687280
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC546500 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546500
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins

name	Sept8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20362 MGI:894310
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cycl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:547416 MGI:894272
definition	note : cyclin-like pseudo : _no_value

name	Kif3a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16568 MGI:107689
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16189 MGI:96556
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16163 MGI:96541
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667731 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667731
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 6 Proteins pseudo : _no_value

name	Rad50 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19360 MGI:109292
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16191 MGI:96557
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Irf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16362 MGI:96590
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sar1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21313475 GeneID:66397 MGI:1913647
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SAR1 gene homolog B (S. cerevisiae) transcript_id : NM_025535.1

name	Phf15 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892861 GeneID:76901 MGI:1924151
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PHD finger protein 15 transcript_id : NM_199299.3

name	D11Ertd497e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542452 GeneID:52626 MGI:1261797
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 11, ERATO Doi 497, expressed transcript_id : NM_029976.2

name	Ube2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801975 GeneID:22210 MGI:102944
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae) transcript_id : NM_009458.3

name	Cdkl3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142362148 GeneID:213084 MGI:2388268
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin-dependent kinase-like 3 transcript_id : NM_153785.3

name	LOC100040437 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261880 GeneID:100040437
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs product : hypothetical protein LOC100040437 transcript_id : XM_001474679.1

name	Ppp2ca (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365556 GeneID:19052 MGI:1321159
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform transcript_id : NM_019411.3

name	Olfr1373 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46402204 GeneID:211472 MGI:3031207
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactory receptor 1373 transcript_id : NM_207227.1

name	Olfr1371 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46402258 GeneID:276865 MGI:3031205
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactory receptor 1371 transcript_id : NM_207253.1

name	Skp1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803097 GeneID:21402 MGI:103575
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : S-phase kinase-associated protein 1A transcript_id : NM_011543.3

name	Tcf7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348105 GeneID:21414 MGI:98507
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcription factor 7, T-cell specific transcript_id : NM_009331.3

name	Vdac1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347292 GeneID:22333 MGI:106919
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : voltage-dependent anion channel 1 transcript_id : NM_011694.2

name	9530068E07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802961 GeneID:213673 MGI:2654705
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9530068E07 gene transcript_id : NM_153117.2

name	LOC667659 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261882 GeneID:667659
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs product : hypothetical LOC667659 transcript_id : XM_991730.2

name	LOC100040523 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261884 GeneID:100040523
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to reproductive homeobox on X chromosome 8 transcript_id : XM_001474858.1

name	Fstl4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57527847 GeneID:320027 MGI:2443199
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : follistatin-like 4 transcript_id : NM_177059.3

name	LOC623205 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94390082 GeneID:623205
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 88 ESTs, 2 Proteins product : similar to TATA box-binding protein-associated factor, RNA polymerase II, K, 18kD transcript_id : XM_887643.2

name	Hspa4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112293265 GeneID:15525 MGI:1342292
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heat shock protein 4 transcript_id : NM_008300.3

name	Zcchc10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142359536 GeneID:67966 MGI:1196228
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, CCHC domain containing 10 transcript_id : NM_026479.3

name	Aff4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:17298671 GeneID:93736 MGI:2136171
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : AF4/FMR2 family, member 4 transcript_id : NM_033565.1

name	Leap2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113374195 GeneID:259301 MGI:2672795
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : liver-expressed antimicrobial peptide 2 transcript_id : NM_153069.3

name	Uqcrq (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21539584 GeneID:22272 MGI:107807
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquinol-cytochrome c reductase, complex III subunit VII transcript_id : NM_025352.1

name	Gdf9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679982 GeneID:14566 MGI:95692
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : growth differentiation factor 9 transcript_id : NM_008110.1

name	Shroom1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125628647 GeneID:71774 MGI:1919024
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : shroom family member 1 transcript_id : NM_027917.2

name	Ankrd43 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125628645 GeneID:237761 MGI:2687280
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat domain 43 transcript_id : NM_183173.2

name	LOC546500 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:63622470 GeneID:546500
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins product : similar to RPL9 transcript_id : XM_621250.1

name	Sept8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39930476 GeneID:20362 MGI:894310
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : septin 8 transcript_id : NM_033144.1

name	Kif3a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124517729 GeneID:16568 MGI:107689
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kinesin family member 3A transcript_id : NM_008443.3

name	Il4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:10946583 GeneID:16189 MGI:96556
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 4 transcript_id : NM_021283.1

name	Il13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371356 GeneID:16163 MGI:96541
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 13 transcript_id : NM_008355.2

name	Rad50 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679608 GeneID:19360 MGI:109292
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAD50 homolog (S. cerevisiae) transcript_id : NM_009012.1

name	Il5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754335 GeneID:16191 MGI:96557
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 5 transcript_id : NM_010558.1

name	Irf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680466 GeneID:16362 MGI:96590
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interferon regulatory factor 1 transcript_id : NM_008390.1

name	Sar1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313476 CCDS:CCDS24661.1 GeneID:66397 MGI:1913647
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : SAR1a gene homolog 2 protein_id : NP_079811.1

name	Phf15 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84490377 CCDS:CCDS24662.1 GeneID:76901 MGI:1924151
definition	GO_function : GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : PHD finger protein 15 protein_id : NP_955003.2

name	D11Ertd497e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313402 CCDS:CCDS24663.1 GeneID:52626 MGI:1261797
definition	codon_start : 1 product : hypothetical protein LOC52626 protein_id : NP_084252.1

name	Ube2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560630 CCDS:CCDS24664.1 GeneID:22210 MGI:102944
definition	GO_component : GO:0000785 - chromatin [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004840 - ubiquitin conjugating enzyme activity [Evidence IEA]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence IEA]; GO:0006464 - protein modification [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]; GO:0007288 - sperm axoneme assembly [Evidence IMP]; GO:0006512 - ubiquitin cycle [Evidence IEA]; GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : ubiquitin-conjugating enzyme E2B, RAD6 homology protein_id : NP_033484.2

name	Cdkl3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83715988 CCDS:CCDS24665.1 GeneID:213084 MGI:2388268
definition	GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : cyclin-dependent kinase-like 3 protein_id : NP_722480.2

name	LOC100040437 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261881 GeneID:100040437
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474729.1

name	Ppp2ca (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9506983 CCDS:CCDS24666.1 GeneID:19052 MGI:1321159
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005829 - cytosol [Evidence ISS] [Evidence IDA]; GO:0015630 - microtubule cytoskeleton [Evidence ISS]; GO:0005739 - mitochondrion [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS]; GO:0005886 - plasma membrane [Evidence IDA]; GO:0000159 - protein phosphatase type 2A complex [Evidence ISS]; GO:0005625 - soluble fraction [Evidence ISS] GO_function : GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0046982 - protein heterodimerization activity [Evidence ISS]; GO:0000158 - protein phosphatase type 2A activity [Evidence TAS] GO_process : GO:0006672 - ceramide metabolism [Evidence ISS]; GO:0000188 - inactivation of MAPK activity [Evidence ISS]; GO:0006917 - induction of apoptosis [Evidence ISS]; GO:0007498 - mesoderm development [Evidence IMP]; GO:0030308 - negative regulation of cell growth [Evidence ISS]; GO:0042518 - negative regulation of tyrosine phosphorylation of Stat3 protein [Evidence ISS]; GO:0006470 - protein amino acid dephosphorylation [Evidence TAS] [Evidence ISS]; GO:0030155 - regulation of cell adhesion [Evidence ISS]; GO:0045595 - regulation of cell differentiation [Evidence ISS]; GO:0006275 - regulation of DNA replication [Evidence ISS]; GO:0040008 - regulation of growth [Evidence ISS]; GO:0000074 - regulation of progression through cell cycle [Evidence ISS] [Evidence TAS]; GO:0045449 - regulation of transcription [Evidence ISS]; GO:0006445 - regulation of translation [Evidence ISS]; GO:0030111 - regulation of Wnt receptor signaling pathway [Evidence ISS]; GO:0010033 - response to organic substance [Evidence ISS]; GO:0008380 - RNA splicing [Evidence ISS]; GO:0019932 - second-messenger-mediated signaling [Evidence ISS] codon_start : 1 product : protein phosphatase 2a, catalytic subunit, alpha isoform protein_id : NP_062284.1

name	Olfr1373 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46402205 CCDS:CCDS24667.1 GeneID:211472 MGI:3031207
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004984 - olfactory receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS] [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007608 - sensory perception of smell [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : MOR256-69_p; olfactory receptor GA_x6K02T2QP88-3283154-3284089 product : olfactory receptor 1373 protein_id : NP_997110.1

name	Olfr1371 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46402259 CCDS:CCDS24668.1 GeneID:276865 MGI:3031205
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004984 - olfactory receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS] [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007608 - sensory perception of smell [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : olfactory receptor GA_x6K02T2QP88-3214035-3214970 product : olfactory receptor 1371 protein_id : NP_997136.1

name	Skp1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560543 CCDS:CCDS24669.1 GeneID:21402 MGI:103575
definition	GO_component : GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA] GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IC] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 exception : mismatches in translation note : transcription elongation factor B (SIII), polypeptide 1 (15 kDa),-like; transcription elongation factor B (SIII), polypeptide 1-like product : S-phase kinase-associated protein 1A protein_id : NP_035673.2

name	Tcf7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678245 CCDS:CCDS24670.1 GeneID:21414 MGI:98507
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0042981 - regulation of apoptosis [Evidence IDA]; GO:0042127 - regulation of cell proliferation [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA]; GO:0016055 - Wnt receptor signaling pathway [Evidence IDA] codon_start : 1 note : T-cell factor 1; T cell factor-1 product : transcription factor 7, T-cell specific protein_id : NP_033357.1

name	Vdac1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755963 CCDS:CCDS24671.1 GeneID:22333 MGI:106919
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005741 - mitochondrial outer membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0019867 - outer membrane [Evidence IEA] GO_function : GO:0015288 - porin activity [Evidence IEA]; GO:0008308 - voltage-gated ion-selective channel activity [Evidence IEA] GO_process : GO:0006820 - anion transport [Evidence IEA]; GO:0006915 - apoptosis [Evidence IEA]; GO:0001662 - behavioral fear response [Evidence IMP]; GO:0006811 - ion transport [Evidence IEA]; GO:0007612 - learning [Evidence IMP]; GO:0007270 - nerve-nerve synaptic transmission [Evidence IMP]; GO:0007268 - synaptic transmission [Evidence IMP]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : voltage-dependent anion channel 1 protein_id : NP_035824.1

name	9530068E07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037541 CCDS:CCDS24672.1 GeneID:213673 MGI:2654705
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC213673 protein_id : NP_694757.1

name	LOC667659 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261883 GeneID:667659
definition	codon_start : 1 product : hypothetical protein protein_id : XP_996824.2

name	LOC100040523 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261885 GeneID:100040523
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474908.1

name	Fstl4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57527848 CCDS:CCDS24673.1 GeneID:320027 MGI:2443199
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 note : m-D/Bsp120I 1-1 product : follistatin-like 4 protein_id : NP_796033.2

name	LOC623205 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:82934547 GeneID:623205
definition	codon_start : 1 product : hypothetical protein protein_id : XP_892736.1

name	Hspa4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112293266 CCDS:CCDS24674.1 GeneID:15525 MGI:1342292
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]; GO:0006986 - response to unfolded protein [Evidence IEA] codon_start : 1 note : heat shock protein, 110 kDa; heat shock 70 kDa protein 4 product : heat shock protein 4 protein_id : NP_032326.3

name	Zcchc10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27754058 CCDS:CCDS24675.1 GeneID:67966 MGI:1196228
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : zinc finger, CCHC domain containing 10 protein_id : NP_080755.2

name	Aff4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:17298672 CCDS:CCDS24676.1 GeneID:93736 MGI:2136171
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007286 - spermatid development [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : ALL1 fused gene from 5q31; lymphoid nuclear protein related to AF4-like product : AF4/FMR2 family, member 4 protein_id : NP_291043.1

name	Leap2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23346471 GeneID:259301 MGI:2672795
definition	GO_process : GO:0042742 - defense response to bacterium [Evidence IEA]; GO:0051707 - response to other organism [Evidence IEA] codon_start : 1 product : liver-expressed antimicrobial peptide 2 protein_id : NP_694709.1

name	Uqcrq (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21539585 GeneID:22272 MGI:107807
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005746 - mitochondrial electron transport chain [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : complex III subunit VII; ubiquinol-cytochrome c reductase binding protein; low molecular mass ubiquinone-binding protein (Qpc-pending) product : low molecular mass ubiquinone-binding protein protein_id : NP_079628.1

name	Gdf9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679983 CCDS:CCDS24679.1 GeneID:14566 MGI:95692
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IEA]; GO:0008083 - growth factor activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : growth differentiation factor 9 protein_id : NP_032136.1

name	Shroom1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125628648 CCDS:CCDS24680.1 GeneID:71774 MGI:1919024
definition	codon_start : 1 product : apical protein 2 protein_id : NP_082193.2

name	Ankrd43 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125628646 CCDS:CCDS24681.1 GeneID:237761 MGI:2687280
definition	codon_start : 1 product : ankyrin repeat domain 43 protein_id : NP_898996.2

name	LOC546500 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:63622471 GeneID:546500
definition	codon_start : 1 product : similar to RPL9 protein_id : XP_621250.1

name	Sept8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39930477 GeneID:20362 MGI:894310
definition	GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA] codon_start : 1 note : septin-like product : septin 8 protein_id : NP_149156.1

name	Kif3a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328138 GeneID:16568 MGI:107689
definition	GO_component : GO:0005871 - kinesin complex [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA]; GO:0005875 - microtubule associated complex [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003777 - microtubule motor activity [Evidence IEA]; GO:0003774 - motor activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007368 - determination of left/right symmetry [Evidence IMP]; GO:0009953 - dorsal/ventral pattern formation [Evidence IMP]; GO:0001822 - kidney development [Evidence IMP]; GO:0007018 - microtubule-based movement [Evidence IEA] codon_start : 1 note : kinesin-II subunit; kinesin family-like; N-4 kinesin product : kinesin family member 3A protein_id : NP_032469.2

name	Il4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946584 CCDS:CCDS24682.1 GeneID:16189 MGI:96556
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IDA]; GO:0008083 - growth factor activity [Evidence IEA]; GO:0005126 - hematopoietin/interferon-class (D200-domain) cytokine receptor binding [Evidence IEA]; GO:0005136 - interleukin-4 receptor binding [Evidence TAS] [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0042113 - B cell activation [Evidence IEA]; GO:0008203 - cholesterol metabolism [Evidence TAS]; GO:0006955 - immune response [Evidence IEA]; GO:0043066 - negative regulation of apoptosis [Evidence IDA]; GO:0045671 - negative regulation of osteoclast differentiation [Evidence IDA]; GO:0042104 - positive regulation of activated T cell proliferation [Evidence IDA]; GO:0030890 - positive regulation of B cell proliferation [Evidence IDA]; GO:0048295 - positive regulation of isotype switching to IgE isotypes [Evidence IDA]; GO:0048304 - positive regulation of isotype switching to IgG isotypes [Evidence IDA]; GO:0045348 - positive regulation of MHC class II biosynthesis [Evidence IDA]; GO:0042102 - positive regulation of T cell proliferation [Evidence IDA]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0042523 - positive regulation of tyrosine phosphorylation of Stat5 protein [Evidence IDA]; GO:0050776 - regulation of immune response [Evidence IDA]; GO:0042325 - regulation of phosphorylation [Evidence IDA] codon_start : 1 product : interleukin 4 protein_id : NP_067258.1

name	Il13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680403 CCDS:CCDS24683.1 GeneID:16163 MGI:96541
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IEA]; GO:0005126 - hematopoietin/interferon-class (D200-domain) cytokine receptor binding [Evidence IEA]; GO:0005144 - interleukin-13 receptor binding [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA] codon_start : 1 product : interleukin 13 protein_id : NP_032381.1

name	Rad50 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679609 CCDS:CCDS24684.1 GeneID:19360 MGI:109292
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0000781 - chromosome, telomeric region [Evidence IEA]; GO:0030870 - Mre11 complex [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016887 - ATPase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051276 - chromosome organization and biogenesis [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0007126 - meiosis [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]; GO:0000723 - telomere maintenance [Evidence IEA] codon_start : 1 exception : mismatches in translation function : DNA repair protein product : RAD50 homolog protein_id : NP_033038.1

name	Il5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754336 CCDS:CCDS24685.1 GeneID:16191 MGI:96557
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IDA]; GO:0008083 - growth factor activity [Evidence IEA]; GO:0005137 - interleukin-5 receptor binding [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA]; GO:0050731 - positive regulation of peptidyl-tyrosine phosphorylation [Evidence IDA] codon_start : 1 product : interleukin 5 protein_id : NP_034688.1

name	Irf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680467 CCDS:CCDS24686.1 GeneID:16362 MGI:96590
definition	GO_component : GO:0005634 - nucleus [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0006955 - immune response [Evidence IEA]; GO:0045084 - positive regulation of interleukin-12 biosynthesis [Evidence IMP] [Evidence IDA]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : interferon regulatory factor 1 protein_id : NP_032416.1

name	LOC667667 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667667
definition	number : 1 pseudo : _no_value

name	LOC100040576 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040576
definition	number : 1 pseudo : _no_value

name	LOC100040576 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040576
definition	number : 2 pseudo : _no_value

name	Cycl (CDS detail)
type	misc_feature
link	vega ensembl
xref
definition	note : GRAIL 2 excellent exon, frame 1 pseudo : _no_value

name	ENSMUSG00000049427 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149261886 GeneID:432561 MGI:3642517
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : predicted gene, ENSMUSG00000049427 transcript_id : XR_035252.1

name	LOC667731 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:94390089 GeneID:667731
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 6 Proteins product : similar to ribosomal protein S2 pseudo : _no_value transcript_id : XR_002067.1

clone name	MSMg01-143G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-208N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-048J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157M07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-093F16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-466L06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-526E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-048G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180D21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-202K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-150F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492B03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-049N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-127O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248L11
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-497I18.T7 (MSMg01no497_i18.b1)	MSMg01-497I18.TJ (MSMg01no497_i18.g1)
ACC	AG574089	AG574090
length	762	1,241
length of high quality (start - end)	655 (48 - 702)	---
definition	CHROMAT_FILE: MSMg01no497_i18.b1 PHD_FILE: MSMg01no497_i18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:17 2005	CHROMAT_FILE: MSMg01no497_i18.g1 PHD_FILE: MSMg01no497_i18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:17 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC GGAATTCAACATTGTTGTCTGGTTCCTCACCAGCCAGCCATATTGATTTT TTTTGAGAGGCCCAAGGCTGACCAATTAATTAGGCAGTGCTGACTGGCCA GTGAGTCTCTGGGCTGGGATTAGAGATACAGACTGCCACTCCCAGCTTTT TATGTGGGTCTGGGGCTCAAACTCAGGTCCCAAAACCCCATCTGCCCAGC CCCTTAGGTTGACCTGATTCTATTTGCACATCACTTGCTGTGGCTTCCTC CCACTGCTTTCCCCGATGAGCTTTTATTGTTTTCTCAACAGACTGGACAA AATGAAACCAGGAGGCTTCTGGCCACATCTTGCCCTACTCGGGGTCTCCC TGCCGGCCGTGCTGGGATGGATGGACCAAGGAGCCAGCAGAAGCCCGAAT ATGGTTCCAGGAGAGTCGCAGGCAGAGGTATGGTCCCGCCACTAAGGACA TAGCACTTCATACAGACTGCTTTTCTGTGTTACAGTGTCCGATTGTCTAA TTTCTCTCCCACTTTTAGATCAACTAGGCCACTGTGCAAGTTCAAATTAC ACTCCTTTTTCTGGTAGGGGACAGGAGGCAACAAGAGGCATTGTCACAGG TGGGCTATGGCTCAGAAATCTCTCATCAATGAAAGCACCCCCCCCCTACT GTGTTTCTTCATGACACATTTAGCCACCCACAGAGAACCTTCCAGGACTG TCCTCTCTGTGT	AACCAAGGAACGTGGGGCCCGGCCCCGCGAGGNNTTAGTTTGGGTTCTCC CTAATATTTTGAGGGGTGAAAGAGGATGAGCGTTTACCCTACCGATAAGG AGCGGAAGAACACAAAATAAATATCAAATACAGCAAGACCGCGCGAACGA AGCAGGCACGATGTAGGGCATATAGAGGGAGTGAGAAACCGCATGAAGTA AGATAGACGGCCTGCTTGTGAGATTAGACTAGACAGTGTTGCGGTGGCCT TGATTGTAGTCGTTTCTCTCATGTTCGAGGCTTGCCCTGACTGTCGCTCG GGCGGTCCGTNATATATCTATTAATCACGCACACGCAAGTACAAAGAACA CCGCCAGCGCACTCCCCTGTTGAGAAGTATGCATCGGGTGGGGAGAGCGA AGTTATACAGAAGGCTACGTGAAGAGGTGCCGCTTNAATACGGATANACG ACGCGCTTGTGCGGGATAGTATGTATATTCAGCCAATTATTGTATCGGTG CGGGCTGGACTTATACCTGCGATGCCGCTAGATTCATTGATAGATCCTCA GCACGCCACGCGCATGCGAATAATAACCCAAAATATAAGCTATATAATCC CCACACGTATAATAGAACGATAGGTTGCGCCAAGTGTCAGATATAGTTAC TCATCGACGACGTCTGACGGTAGCTCGAGGCCATCTCCTGTTTTCCGCTG ATTTTACACATATTTACATATAGGAGACATAGTTGTACGAGTGTATATAT CGCCGACAACTTGTTTAACACTGTTCGGCTATTTATCGCCTTTTCCGTTA CGCCTCGTCCAGCGCAGCGATCTTTTGTTCACATTACATTACCGTATCGA TGATACATGTCACATACCACAATACCACACGACACATGTGTAGTGCCACT GTAGTAGACTGAATACGAGTACTACAGAGCTACCCGCGAATTATCGAACG ATACGCCTAGCATATCTTTGGTGATATATTGACGCGCTGTGACGCACGAC CATGTGAGGAGCCCTGGGTATAATAATCACCGCTAAAGCTGTACGACTAC TGATCGGCTCTGTCGGTGGTTCGCTTGTGGAGGTCTCTGCGCGCAGAAAC TAGCGTCAGCGCCTGGTTATACTGATGCACCGTATACGCACCCACACGCC GACCATACATATATTACACCGCGTCGATATAAGGTCTCCTCTGCCGTGGC GAAGCATTGTGATGGTGATGTCCCCTTGTATAACCGCAGCG
quality values	Open. Hide. 0 3 6 6 8 8 8 8 11 11 15 26 39 37 37 32 29 20 19 10 10 10 19 19 39 43 37 30 28 30 30 27 21 23 9 9 9 12 9 9 9 15 12 14 18 20 20 24 35 47 47 36 36 36 36 33 33 33 33 33 25 23 21 12 13 9 10 9 9 9 11 19 25 39 40 37 37 41 33 36 36 36 36 36 47 53 53 53 50 50 50 53 57 53 53 53 53 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 51 57 51 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 59 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 68 68 57 57 57 57 57 59 59 59 59 57 57 57 68 68 68 68 68 57 57 68 57 57 57 59 57 57 54 54 54 54 57 57 57 59 59 59 59 57 48 48 57 57 43 57 43 43 43 57 59 59 59 59 48 48 48 48 48 47 47 47 47 41 41 39 37 34 39 39 39 41 46 46 59 48 43 48 48 48 48 43 43 43 43 43 43 43 47 48 48 48 59 59 59 48 48 46 46 46 43 46 57 46 46 43 47 39 39 39 44 44 35 30 30 30 30 35 43 43 48 48 48 59 44 48 48 48 46 57 43 43 43 46 47 59 47 36 36 25 36 30 43 43 42 47 43 43 36 40 30 43 37 42 41 35 35 39 39 43 43 39 43 43 37 36 36 39 39 39 35 35 35 39 39 40 40 40 59 59 39 39 32 32 22 28 28 24 24 25 28 28 28 28 25 25 30 28 28 28 24 28 31 31 31 39 35 31 26 24 23 25 25 19 28 23 23 23 24 19 18 20 20 28 28 35 35 37 34 34 28 28 21 23 12 14 14 27 21 36 35 35 28 28 25 20 20 20 18 18 32 23 32 24 29 30 24 24 22 25 34 39 39 41 41 41 36 35 35 23 23 11 11 11 16 16 32 28 20 20 17 17 14 28 21 20 20 23 24 24 28 31 23 18 19 12 12 12 21 12 12 13 19 19 14 12 12 12 12 14 17 16 20 16 17 15 17 19 18 19 18 18 17 22 25 31 31 21 26 13 13 13 13	Open. Hide. 6 6 6 8 8 8 10 9 9 9 10 10 11 8 8 10 11 8 9 8 10 6 6 6 9 7 6 6 7 7 7 3 0 0 3 8 6 6 6 8 8 8 6 6 6 6 6 8 8 8 7 8 8 8 8 8 8 8 8 6 6 6 6 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 6 6 6 6 8 8 8 8 8 13 6 6 6 6 8 11 9 9 9 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 6 6 6 6 6 8 8 13 8 6 6 6 8 6 8 8 8 8 8 8 8 8 8 8 10 10 10 10 8 8 8 8 8 9 9 10 8 8 8 8 8 8 6 6 6 6 10 8 8 8 6 7 8 6 8 10 10 11 11 10 10 10 10 8 8 8 8 8 6 7 7 10 9 8 8 8 8 8 8 8 10 8 10 6 6 8 8 6 6 6 8 8 8 8 8 8 8 8 8 8 8 8 10 10 10 10 8 8 8 6 6 6 6 8 8 6 6 8 6 8 8 10 8 8 6 6 6 8 6 6 8 6 6 6 6 8 8 8 8 8 10 10 10 9 9 8 8 8 8 8 8 10 10 10 10 10 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 10 10 9 9 12 10 10 9 8 10 8 8 8 8 8 8 3 0 3 6 6 6 6 8 8 8 8 8 8 8 8 10 8 10 8 6 6 6 6 8 6 6 6 6 8 8 8 8 9 9 8 8 10 8 8 8 8 12 12 10 10 8 6 6 6 8 8 8 10 9 9 9 8 8 10 8 8 6 6 6 7 10 6 6 8 6 6 6 6 6 6 8 10 8 8 8 8 8 8 8 8 8 9 8 8 8 8 8 11 11 12 12 13 8 8 6 6 8 8 8 8 8 8 8 7 7 10 10 10 10 10 10 10 9 9 9 11 11 10 10 10 3 0 3 8 8 8 8 8 6 6 6 3 0 3 6 8 6 6 8 8 8 8 8 8 8 8 11 8 10 10 8 8 6 6 6 6 8 8 8 8 8 8 6 6 8 8 6 6 6 8 11 11 11 12 9 9 8 8 8 8 8 6 6 6 6 6 6 6 6 6 6 6 6 8 6 8 8 8 11 11 10 8 8 8 8 10 6 6 8 8 8 8 8 8 8 8 6 6 6 8 8 8 9 10 8 8 8 6 7 10 8 11 9 8 8 6 6 8 8 6 6 8 8 8 8 8 8 10 10 8 8 6 6 8 8 8 8 8 8 15 14 15 15 13 7 7 6 6 6 6 6 6 6 6 6 8 6 6 8 8 11 13 11 11 10 6 6 6 6 6 6 7 12 10 10 9 8 8 6 6 8 8 8 8 8 6 6 6 7 6 9 10 10 10 11 10 12 10 10 11 11 11 6 6 6 6 8 6 8 8 8 8 8 8 8 8 8 10 8 10 8 8 8 11 8 10 9 9 9 10 11 11 11 11 11 11 9 8 8 7 7 6 8 6 6 6 8 8 8 8 8 8 8 6 6 6 7 6 6 11 13 13 15 13 13 13 13 13 12 8 8 8 8 8 8 10 10 10 9 9 10 8 8 8 6 6 8 8 8 10 11 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 8 6 7 8 10 8 8 8 8 8 10 9 9 9 9 9 8 10 10 10 11 10 9 8 8 8 8 8 10 10 8 8 8 8 8 8 12 8 8 6 6 8 8 10 8 8 8 9 9 9 10 10 10 8 8 8 8 8 8 10 10 9 7 8 8 9 9 9 8 7 7 7 8 8 11 9 11 11 11 11 6 8 6 6 6 6 8 8 8 10 6 6 6 8 8 8 8 8 10 8 8 8 10 8 8 8 10 12 13 15 8 8 8 8 8 8 8 8 8 6 6 6 6 6 8 8 8 8 8 8 8 8 8 8 6 8 8 6 6 8 8 8 8 9 9 8 8 8 8 8 8 8 8 10 10 10 8 6 6 6 8 7 8 8 8 10 10 9 8 10 8 8 8 8 11 11 10 6 6 6 6 8 6 8 8 8 8 8 8 8 8 8 10 9 9 10 10 8 11 8 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 9 9 9 9 9 9 10 10 8 8 8 8 8 8 8 10 10 8 8 8 9 8 8 6 6 8 8 6 6 6 8 6 7 7 7 8 6 10 10 10 6 6 6 6 8 8 8 6 6 6 8 8 8 8 8 6 6 6 6 8 10 8 8 6 6 6 8 9 8 11 8 8 8 8 10 10 10 10 10 10 13 14 12 10 10 10 14 12 8 8 6 7 7 8 8 8 6 6 7 6 6 6 8 8 8 8 8 6 6 8 8 6 6 6 8 8 8 8 10 15 13 10 8 8 10 10 8 8 8 10 8 8 8 8 10 19 10 10 8 8 8 8 6 6 6 8 8 9 10 11 8 8 8 8 8 8 8 8 8 10 10 10 10 8 8 8 9 10 10 10 9 11 8 6 6 6 6 8 8 8 8 8 8 9 10 8 8 8 8 6 6 6 6 6 8 10 9 11 11 8 8 6 7 6 6 10 8 11 11 9 10 8 8 8 8 10 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 6 10 7 7 8 8 8 6 6 8 8 11 8 8 8 8 8 8 8 8 6 6 8 10 9 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no497_i18.b1 MSMg01no497_i18.b1 CHROMAT_FILE:
MSMg01no497_i18.b1 PHD_FILE: MSMg01no497_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:17 2005
         (655 letters)



>mm_chr11_52586843_52587901
          Length = 1059

 Score = 1201 bits (621), Expect = 0.0
 Identities = 644/655 (98%), Gaps = 8/655 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacattgttgtctggttcctcaccagccagccatattgattttttttgagaggc 64
           |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaacattgg-gtgtggttcctcaccagccagccatattgattttttttgagaggc 264

                                                                       
Query: 65  ccaaggctgaccaattaattaggcagtgctgactggccagtgagtctctgggctgggatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaaggctgaccaattaattaggcagtgctgactggccagtgagtctctgggctgggatt 324

                                                                       
Query: 125 agagatacagactgccactcccagctttttatgtgggtctggggctcaaactcaggtccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agagatacagactgccactcccagctttttatgtgggtctggggctcaaactcaggtccc 384

                                                                       
Query: 185 aaaaccccatctgcccagccccttaggttgacctgattctatttgcacatcacttgctgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaaccccatctgcccagccccttaggttgacctgattctatttgcacatcacttgctgt 444

                                                                       
Query: 245 ggcttcctcccactgctttccccgatgagcttttattgttttctcaacagactggacaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggcttcctcccactgctttccccgatgagcttttattgttttctcaacagactggacaaa 504

                                                                       
Query: 305 atgaaaccaggaggcttctggccacatcttgccctactcggggtctccctgccggccgtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgaaaccaggaggcttctggccacatcttgccctactcggggtctccctgccggccgtg 564

                                                                       
Query: 365 ctgggatggatggaccaaggagccagcagaagcccgaatatggttccaggagagtcgcag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgggatggatggaccaaggagccagcagaagcccgaatatggttccaggagagtcgcag 624

                                                                       
Query: 425 gcagaggtatggtcccgccactaaggacatagcacttcatacagactgcttttctgtgtt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcagaggtatggtcccgccactaaggacatagcacttcatacagactgcttttctgtgtt 684

                                                                       
Query: 485 acagtgtccgattgtctaatttctctcccacttttagatcaactaggccact----gtgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||
Sbjct: 685 acagtgtccgattgtctaatttctctcccacttttagatcaactaggccactcactgtgc 744

                                                                       
Query: 541 aagttcaaattacactcctttttctggtaggggacaggaggcaacaagaggcattgtcac 600
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 745 aagttcaaattacactcctttttctggtagtggacaggaggcaacaagaggcattgtcac 804

                                                                  
Query: 601 aggtgggctatggctcagaaatctctcatcaatgaaagcaccccccccctactgt 655
           ||||||||||||||||||||||||||||||||||||||||||||||   ||||||
Sbjct: 805 aggtgggctatggctcagaaatctctcatcaatgaaagcacccccc---tactgt 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1059
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1049
Effective search space:   676605
Effective search space used:   676605
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information