BAC Information

Click to search

BAC

Clone NameMSMg01-497K03
Chromosome11 (Build37)
Map Location 25,467,363 - 25,467,533
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042282
Downstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497K03.T7 (MSMg01no497_k03.b1)MSMg01-497K03.TJ (MSMg01no497_k03.g1)
ACCAG574152AG574153
length759736
length of high quality
(start - end)
379 (332 - 710)169 (74 - 242)
definitionCHROMAT_FILE: MSMg01no497_k03.b1 PHD_FILE: MSMg01no497_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:23 2005CHROMAT_FILE: MSMg01no497_k03.g1 PHD_FILE: MSMg01no497_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAATGGC
GCGGAATCTCACCTGATGACTACAAAAGGGCAGAGAAGCACCTGAAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATTCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGGTCATAAATTCAGGCGAC
AGTAGATGCTGGTGAGGATGTGGGGAATGAGGAACACTTCTCCATTTCTG
GTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCC
TCAGAAAATCATACATAGTACTATATATTGATCCAGCAATACCACTCCTG
GGCATATACCCAGAAGATGCTCCAACTTGTAATAAGGACACATGATCCAC
TATGTTCATAGCAGACTATTTATAATATCCAGAAGTTGGAAAGAGCCCAG
ATGTTCCTCAATAGAGGAATGGATACAGAAAATGTGGTCCGTTTACACAA
TGGAGTACTACTTAACTATTAAAAACAATGGATTTATGAAATTCTTAGGC
TAATGGATGTATCTGGAGGATATCTTCCTGAGTGAGGTAACCCAATCACA
AAAGAACACACATGATATTTACTCACTGATAAGTGGATATTAGCCCAGAA
ACTTAGAATACCCCAGATATAATTTGCAAAACACTTGAAACTCAAGAAGG
AGGAGGACCAAAGTGTGGATACTTCGTTCCTTCTTAGAACAGGGAGCAAA
ATATCCATG
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGAATTGGGAGATGATAAATACCAACGA
AGTCATAACAATCATTAAGATGTAGGGAAAAGAGAGGAACTGTTGTATAG
TCTGTGCTGCTTACACTGTAAGTGACACTTAGGGATTGATTTCTCACACA
CTCCCAAGTTCTATCAGAGCACATATAGCTAGACGGCAGATACNNTAAGG
TGCTGGNNTTTCTTAATGGTGNNTGCTCCACTTCTAACAATTATATGTNG
GAGTTTAGGTTCCTGTTTGATCTTCTATTTGTATACAATTGGGTCTCACA
GAAGCTTGGCACTCACCCTGGGGGAAAAAAAAAAGTGGCCAAAAAAAGGG
GGGGTTTTTTTGGGGGGGAAAAAAAAAACCCCCCCTCCAAAAAAAAAATT
TTTNTTTANNNNNTTCAAAATGAGNNACAAGGATAATAGGTNNNGNTGGT
CTGNCCNTTGCCTGTGNCTGGTGAGAAATAGATATGGNNTNTTGTNATAG
GATAAAAANNNNAAAATAAANNATAGTTTCNCTCTTTTAATTATAAAGAG
AGCCNTCNCNNNTCTCCAAGAAAGATATCTGCAGTTGATTACGTTAAGTC
CCTACCGGGTTATTTTTTTTCTCTTGTTATCTTTAGCAGCCGGCGGCTTG
NNNTNCAGAGGGGAAANNCAAAAGAGAGGGAGGNAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_k03.g1 MSMg01no497_k03.g1 CHROMAT_FILE:
MSMg01no497_k03.g1 PHD_FILE: MSMg01no497_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:24 2005
         (169 letters)



>mm_chr11_25467163_25467733
          Length = 571

 Score =  296 bits (153), Expect = 5e-85
 Identities = 166/171 (97%), Gaps = 2/171 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattgggagatgataaataccaacgaagtcataacaatcattaagatgtagggaaaaga 60
           ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 371 gaattgggagatgataaataccaacgaggtcataacagtcattaagatgtagggaaaaga 312

                                                                       
Query: 61  gaggaactgttgtatagtctgtgctgcttacactgtaagtgacacttagggattgatttc 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaggaactgttgtatagtctgtgttgcttacactgtaagtgacacttagggattgatttc 252

                                                              
Query: 121 tcacacactcccaagttctatcagagcaca--tatagctagacggcagata 169
           ||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 251 tcacacactcccaagttctatcagagcacacatatagctagacggcagata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 571
Length adjustment: 8
Effective length of query: 161
Effective length of database: 563
Effective search space:    90643
Effective search space used:    90643
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)