BAC Information

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BAC

Clone NameMSMg01-497K05
Chromosome11 (Build37)
Map Location 43,084,632 - 43,085,038
singlet/doubletsinglet
Overlap genenone
Upstream geneGabra6, Gabrb2, Atp10b
Downstream geneEG544767, Pttg1, Slu7, LOC100039392, C1qtnf2, Ccnjl, Fabp6, LOC620562, 4631424J17Rik, Ttc1, Adra1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497K05.T7 (MSMg01no497_k05.b1)MSMg01-497K05.TJ (MSMg01no497_k05.g1)
ACCAG574156AG574157
length735795
length of high quality
(start - end)
406 (330 - 735)32 (81 - 112)
definitionCHROMAT_FILE: MSMg01no497_k05.b1 PHD_FILE: MSMg01no497_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:24 2005CHROMAT_FILE: MSMg01no497_k05.g1 PHD_FILE: MSMg01no497_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCG
CGGAATTCTCTTGCTTTTCTAACAATCTAGGCAATGCTGTTCTATTTGCT
GTCACTTTTCACCTTTTCCCTACTTCCTCAATCCCTCCCCTCGCACGGGG
AGCCAGGTTGACCTCATAAGCTGCAACTTCTCCAGGTTGACTTTCCTCTT
TGCTGTCTAAGGTTCTAATGATTTACTAACTCATTTCCAGACTTTTCTCT
TTGTTACTGTCTTCAATATTTCCTTTGTTGGCTTGGATTCATTCTGTAGC
AGAGTCATATGGGGGACACTTCTTTTTAGCCATCTGGGTGTTTCTCCTCC
AGCCTGTCAGCCTCCTGGATCTGTCAGCCTGGACCAAGAGACCTTGATCT
GGCCAAGAAAACCTGCCATAGATTATTGCTGGCATGTCTTGTTTTCCTAT
CATCCATACCCTCCATACATTTCCATACCCACCTACGCCACCTCTAGATG
ATCTCTCTTCTGGGATTTCCTGATCATCTGCTGCTTCTGGCTCGCTCTAG
TATCTCTTTGACTCTCAAGATAAACCCCAGTAGCTGATTTAATGTAAGCA
TGGTAGCTTCCTTTTGCCTTCCAGGTTTTTAGCACTTCACCAGTTTCACA
ACTAGAACAGATTTTAGAGATCAGCTCTCAGTTTCTAACATTTGTGACCC
ACAGAGTANAATGGAGAAGATACCTATATAATGTC
NNCCCCCTATACAGAGGGAGGCCAGGCGGCCGCCTGGCTCCATACCAAAG
GTGACACTATAGAAGGTCCAACAAAACACTGTACTAAACCCATCTAGGTC
CAAGCTTTTTTTGTTTGTTTGTTTCCCCGGTTGGTAGGTTGGTTGGTTGG
TTANAAAAANANAAAATAAAAAAAAGAAAAAAAAAAAGAGAAAAAAAAAA
AAAAAAAGTAAAAATATGATGTAAAAAAACTAAGAAGAAAAAGAACAAAA
CATTTAATTAACCACAACACCCCCACCCACAAACACAACAACAAAACACG
CCCCCCACCCCACCCCCCCACCTTAAGTGCCACCCACCACAACAAGAACA
CCAAAAACCCCCCATCATTACCCCCCCCCCCCCTTCACAAACACCCACAA
AACACTCAACAACAAACCAACCCCCCCCCCCAAAAAAACACCCCCCCCCA
CTAACCCAACACATACACCCACACACCACACCCCCACAACACCACCCCAA
ACCAAACACCCCCCCAACCACAACCCCCCCTAAACCCCCACACCACCCCA
CAAACACCACCCCCCCCCCACACCCCCCACCACAAAACCCCCAAACCACC
CCCCCTCACCCAATCCCAAANACACCACCCACCCCCAACAACAAACACAC
CCAACCCACCAAACCCCAAGACAAATAAAATAAACATACCCCCCCCACAC
CCAAAAAACAAACCCACAGCAACACACAAAACACCCCGAAACACCAGCAA
AACACCACCCCCAACAAACACCACCCCCCCCCAAACACACACACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_k05.b1 MSMg01no497_k05.b1 CHROMAT_FILE:
MSMg01no497_k05.b1 PHD_FILE: MSMg01no497_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:24 2005
         (406 letters)



>mm_chr11_43084432_43085238
          Length = 807

 Score =  712 bits (368), Expect = 0.0
 Identities = 397/407 (97%), Gaps = 1/407 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatctgggtgtttctcctccagcctgtcagcctcctggatctgtcagcctggaccaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ccatctgggtgtttctcctccagcctgtcagcctcctggatctgtcagcctggaccaaga 548

                                                                       
Query: 61  gaccttgatctggccaagaaaacctgccatagattattgctggcatgtcttgttttccta 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 547 gaccttgatctggccaagaaaatctgccatagattattgctggcatgtcttgttttctta 488

                                                                       
Query: 121 tcatccataccctccatacatttccatacccacctacgccacctctagatgatctctctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 487 tcatccataccctccatacatttccatacccacctacgccacctctagatgatctctctg 428

                                                                       
Query: 181 ctgggatttcctgatcatctgctgcttctggctcgctctagtatctctttgac-tctcaa 239
           |||||||||||||||||||| ||||||||||||| |||||||||||||| ||| ||||||
Sbjct: 427 ctgggatttcctgatcatctcctgcttctggctcactctagtatctcttagacctctcaa 368

                                                                       
Query: 240 gataaaccccagtagctgatttaatgtaagcatggtagcttccttttgccttccaggttt 299
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 367 gataaaccccagtagctgatttaatgtaagcatggtagctttcttttgccttccaggttt 308

                                                                       
Query: 300 ttagcacttcaccagtttcacaactagaacagattttagagatcagctctcagtttctaa 359
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 307 ttagcacttcaccagtttcacaactagaacagattttagagaccagctctcagtttctaa 248

                                                          
Query: 360 catttgtgacccacagagtanaatggagaagatacctatataatgtc 406
           |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 247 catttgtgacccacagagtaaaatggagaagatacctatataatgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 807
Length adjustment: 9
Effective length of query: 397
Effective length of database: 798
Effective search space:   316806
Effective search space used:   316806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)