BAC Information

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BAC

Clone NameMSMg01-498N12
Chromosome11 (Build37)
Map Location 105,541,841 - 105,542,445
singlet/doubletsinglet
Overlap geneTanc2
Upstream geneLOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807
Downstream geneLOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498N12.T7 (MSMg01no498_n12.b1)MSMg01-498N12.TJ (MSMg01no498_n12.g1)
ACCAG575069AG575070
length751751
length of high quality
(start - end)
605 (79 - 683)592 (53 - 644)
definitionCHROMAT_FILE: MSMg01no498_n12.b1 PHD_FILE: MSMg01no498_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:03 2005CHROMAT_FILE: MSMg01no498_n12.g1 PHD_FILE: MSMg01no498_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCAGATGTATCTCCACAAGACATGGCTAAATTTCAGA
TATTTTAAGAATGTGATCTTGTACTTTTTCTTAAAACTTTTATGATTGTT
TTATTTTGATAAATGTGAGCCATTAATGTAAAGGTTTATGATTCATTGAA
GAATGATACCACAACTCAAATATATGTAAATGCAAAGAATATTGTCCCAT
TACCAAGATAGACATCCAAGTGAGCTTGCAGGCCTGATTTAAAGCACCTC
TATGTTAATCTGTTGGGTCTATCTCCACATATATTGCTTTACCAGGGTGT
CAGGGCTGGAACTTGCTGGGAAGGTCTAGAAACTGTTGGCTCAGGAAGTA
GCTGAATAAGTCTGGAAACTGCTGTTGTCCTTGCTTCAGGCCAGGTGATG
GGGCAGCTTCTGAGGCCTGGACTTGGACTGGAATTGCCAAGTTCTTGGAA
ACAGAGATTTAGGCCCTCTCCTTTGCTGCCAATTTGAAACATGTCATGGA
ATTAGCCTAGCCTTCTCATTAAAATGACAGAGTCATCCAAATAAAAGAAA
TGGAAATAGGAACATCAGTAAAGAGAAAGGACTTAAAGATGCAAATGAAA
AGATAAGACAATCTGCAGCTCTGAACTCTAGAGAGAACCAGTGTTGTAAC
TAGTATTTTTGAACCTATTTTTAATGATGGTTCTTAAATACTTTAACCTC
C
NTTTTTCGATGCAGTGGGAGGCCTGGNGGCCGCCTGTTCACAAATTTAGG
TGAACTATAGAATTTCCGCGAAATTCCTGATCTTTCCAAAACTTTTATCA
TGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATG
ATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGAT
GGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTT
GGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGA
ATTTTATTGAGGATTTTTGCTTCTTATATTCATAAGAGAAATTGGTCTGA
AGTTCTCTATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATA
GTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTG
AAATAGTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGGTAGA
ACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTA
TTAATAACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATGGTC
AACTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGT
CCATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTACAAG
GATCTGACGGTGGCTTTGATTCCTTCATGATCCGCTGTTTTGTCTCCCTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_n12.b1 MSMg01no498_n12.b1 CHROMAT_FILE:
MSMg01no498_n12.b1 PHD_FILE: MSMg01no498_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:03 2005
         (605 letters)



>mm_chr11_105541641_105542645
          Length = 1005

 Score = 1147 bits (593), Expect = 0.0
 Identities = 602/605 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagacatggctaaatttcagatattttaagaatgtgatcttgtactttttcttaaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagacatggctaaatttcagatattttaagaatgtgatcttgtactttttcttaaaact 260

                                                                       
Query: 61  tttatgattgttttattttgataaatgtgagccattaatgtaaaggtttatgattcattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttatgattgttttattttgataaatgtgagccattaatgtaaaggtttatgattcattg 320

                                                                       
Query: 121 aagaatgataccacaactcaaatatatgtaaatgcaaagaatattgtcccattaccaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaatgataccacaactcaaatatatgtaaatgcaaagaatattgtcccattaccaaga 380

                                                                       
Query: 181 tagacatccaagtgagcttgcaggcctgatttaaagcacctctatgttaatctgttgggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagacatccaagtgagcttgcaggcctgatttaaagcacctctatgttaatctgttgggt 440

                                                                       
Query: 241 ctatctccacatatattgctttaccagggtgtcagggctggaacttgctgggaaggtcta 300
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatctccacagacattgctttaccagggtgtcagggctggaacttgctgggaaggtcta 500

                                                                       
Query: 301 gaaactgttggctcaggaagtagctgaataagtctggaaactgctgttgtccttgcttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaactgttggctcaggaagtagctgaataagtctggaaactgctgttgtccttgcttca 560

                                                                       
Query: 361 ggccaggtgatggggcagcttctgaggcctggacttggactggaattgccaagttcttgg 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggccaggtggtggggcagcttctgaggcctggacttggactggaattgccaagttcttgg 620

                                                                       
Query: 421 aaacagagatttaggccctctcctttgctgccaatttgaaacatgtcatggaattagcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaacagagatttaggccctctcctttgctgccaatttgaaacatgtcatggaattagcct 680

                                                                       
Query: 481 agccttctcattaaaatgacagagtcatccaaataaaagaaatggaaataggaacatcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agccttctcattaaaatgacagagtcatccaaataaaagaaatggaaataggaacatcag 740

                                                                       
Query: 541 taaagagaaaggacttaaagatgcaaatgaaaagataagacaatctgcagctctgaactc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taaagagaaaggacttaaagatgcaaatgaaaagataagacaatctgcagctctgaactc 800

                
Query: 601 tagag 605
           |||||
Sbjct: 801 tagag 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)