Query= MSMg01no499_f19.b1 MSMg01no499_f19.b1 CHROMAT_FILE:
MSMg01no499_f19.b1 PHD_FILE: MSMg01no499_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:43 2005
(558 letters)
>mm_chr11_57219229_57220184
Length = 956
Score = 977 bits (505), Expect = 0.0
Identities = 541/555 (97%), Gaps = 6/555 (1%)
Strand = Plus / Plus
Query: 6 gaattctcacatcattcctctctatcaaatgtcttgtgacccagcagtgttttgctacct 65
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 206 gaattctcacatcattcctctctatcaaaggtcttgtgacccagcagtgttttgctgcct 265
Query: 66 tgcttctcaattgtctgctctactccagaagttacatgagaacaggaaccagacctgcct 125
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 266 tgcttctcaattgtctgctctactccagaagtttcatgagaacaggaaccagacctgcct 325
Query: 126 ctctattcccagtgctttgaagactttcgggtaaactgcaggcatttagcatctgtttgc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctctattcccagtgctttgaagactttcgggtaaactgcaggcatttagcatctgtttgc 385
Query: 186 tgaatgtgcagtaagtggggaataaatggactccccttcccgtactcatgcatgggggaa 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgaatgtgcagtaagtggggaataaatggactccccttcccgtactcatgcatgggggaa 445
Query: 246 tgggtgggatggagaactcagaggctgtttcaagactttagcaaataccaaggagagatc 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 446 tgggtgggatggagaactcagaggctgtttcaagactttagcaaataccaaggagaga-c 504
Query: 306 atttgaccaggagatgggctgccttgccagtgacctagcattgtggcatgcccagagagg 365
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 atttgaccaggagatgggctgccttgctagtgacctagcattgtggcatgcccagagagg 564
Query: 366 atggccatcacagag--ggggcttgggcatcataagagaagctggactggttatgtgttc 423
|||||||||||||| | ||||||||||||||||||||||||||| ||||||||||
Sbjct: 565 gtggccatcacagagatg---cttgggcatcataagagaagctggactagttatgtgtta 621
Query: 424 gtcactgctctattgctgtgaagagacacaatgaccaaggcaacactcgtgaatgaaagc 483
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 622 gtcactgctctattgctgtgaagagacacaatgaccaaggcaacacttgtgaatgaaagc 681
Query: 484 atttaattaggggcttggttacactttcaggtcaacccactctgctcgtggtgggagcat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 atttaattaggggcttggttacactttcaggtcaacccactctgctcgtggtgggagcat 741
Query: 544 ggcagcacacagagt 558
|||||||||||||||
Sbjct: 742 ggcagcacacagagt 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 956
Length adjustment: 10
Effective length of query: 548
Effective length of database: 946
Effective search space: 518408
Effective search space used: 518408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_f19.g1 MSMg01no499_f19.g1 CHROMAT_FILE:
MSMg01no499_f19.g1 PHD_FILE: MSMg01no499_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:43 2005
(541 letters)
>mm_chr11_57379439_57380379
Length = 941
Score = 965 bits (499), Expect = 0.0
Identities = 532/545 (97%), Gaps = 7/545 (1%)
Strand = Plus / Minus
Query: 1 agaggcacaggtgagcgcttagaggagactgcttctacttcggtagctcctggagaacct 60
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 904 agaggcacagatgagcgcttagaggaga-tgcttctacttcggtagctcctggagaacct 846
Query: 61 ttcatttatttggatcgtgtcttagatctgccctctgtgatcaaattaatgaagagaag- 119
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 ttcatttatttgaatcgtgtcttagatctgccctctgtgatcaaattaatgaagagaagc 786
Query: 120 -cacacacacacatacacacacacacacacacacacacacacacacacacaaagcccctt 178
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 785 acacacacacacacacacacacacacacacacacacacacacacacaca--aagcccctt 728
Query: 179 ggtgcaggataaaaaagacatcaggctcaaaagaaagggtgagagcgagaaagcagcgag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ggtgcaggataaaaaagacatcaggctcaaaagaaagggtgagagcgagaaagcagcgag 668
Query: 239 tgcctgaggggcccctgtgcctggctgcctggcagaagcttcacagagccggcttcttct 298
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 667 tgcctgaggggcccctgtgcctggctgcctggcagaagcttgacagagccggcttcttct 608
Query: 299 cttctctgtctagggagatgcgccagcagcgagggaaggttgccatctcaggaagctcga 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 607 cttctctgtctagggagatgcgccagcagcgagggaaggttgccatctcaggaagctcca 548
Query: 359 ctaacgtggtggtagatctgtgtaaaggcctccccaggaggacctaccctttctgcataa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ctaacgtggtggtagatctgtgtaaaggcctccccaggaggacctaccctttctgcataa 488
Query: 419 cccagttcccccagtcatccaaatatttttattcctggcttattttttcagagaggggaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cccagttcccccagtcatccaaatatttttattcctggcttattttttcagagaggggaa 428
Query: 479 tgagctctgcaggaagctaggaggtgagggagggcctagtgggttggagctgtgtctg-- 536
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 427 tgagctctgcaggaagctaggagatgagggagggcctagtgggttggagctgtgtctgtg 368
Query: 537 cagca 541
|||||
Sbjct: 367 cagca 363
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
