Query= MSMg01no499_g11.b1 MSMg01no499_g11.b1 CHROMAT_FILE:
MSMg01no499_g11.b1 PHD_FILE: MSMg01no499_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:46 2005
(691 letters)
>mm_chr11_56582791_56583880
Length = 1090
Score = 1266 bits (655), Expect = 0.0
Identities = 679/687 (98%), Gaps = 1/687 (0%)
Strand = Plus / Minus
Query: 5 gaattccccaagattttttaccacatactacactacatgggatatcgtgtgatacatgga 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 gaattccccaagatttcttaccacatactacactacatgggatatcgtgtgatacatgga 831
Query: 65 ctgattctcacctaccagtcatacttactggaggaagctggccatcaccatctcctacac 124
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 830 ccgattctcacctaccagtcatactcactggaggaagctggccatcaccatctcctacac 771
Query: 125 taaagtccacagctcagagtaaaactggtttctaagaaaagagcaagaatgaaaacatga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 taaagtccacagctcagagtaaaactggtttctaagaaaagagcaagaatgaaaacatga 711
Query: 185 taggcttgttcactttgtggaatgaagacaatcccaagtccatttactactgcagttcca 244
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 taggcttgttcgctttgttgaatgaagacaatcccaagtccatttactactgcagttcca 651
Query: 245 ccttctaaaataccaaagtagtaaagctttcagataatcacagtagacattcctagaacc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ccttctaaaataccaaagtagtaaagctttcagataatcacagtagacattcctagaacc 591
Query: 305 ctttctgtaatccatacacaatgttattgtccatttttttttgggcaagaaaactaaaat 364
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 590 ctttctgtaatccatacacaatgttattgtccattttttttt-ggcaagaaaactaaaat 532
Query: 365 ataaagcatagaaattactggcctcaaattaagtagcaagagataagtttcatagtgaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ataaagcatagaaattactggcctcaaattaagtagcaagagataagtttcatagtgaga 472
Query: 425 tcatttgattcaagttggctttgtaaactcctgacagtttttagtgactccagacttaag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tcatttgattcaagttggctttgtaaactcctgacagtttttagtgactccagacttaag 412
Query: 485 aatggatgtcagaatcaaggagaaagtcttaaaaaattgtaactgctcaggcttcactcc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aatggatgtcagaatcaaggagaaagtcttaaaaaattgtaactgctcaggcttcactcc 352
Query: 545 acatatggaggcttaaactcgattgtgaatttgagaaaacgagctcacacactgtctcaa 604
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 351 acatatggaggcttgaactcgattgtgaatttgagaaaactagctcacacactgtctcaa 292
Query: 605 cccttgaccactttaaaagccatgatcttgtcatttttgtctttgtgttatgattatgga 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cccttgaccactttaaaagccatgatcttgtcatttttgtctttgtgttatgattatgga 232
Query: 665 acagaattccacctgtaagaaaaaggg 691
|||||||||||||||||||||||||||
Sbjct: 231 acagaattccacctgtaagaaaaaggg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1090
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1080
Effective search space: 735480
Effective search space used: 735480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_g11.g1 MSMg01no499_g11.g1 CHROMAT_FILE:
MSMg01no499_g11.g1 PHD_FILE: MSMg01no499_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:46 2005
(622 letters)
>mm_chr11_56487527_56488548
Length = 1022
Score = 549 bits (284), Expect = e-160
Identities = 318/336 (94%), Gaps = 13/336 (3%)
Strand = Plus / Plus
Query: 291 ctggcatcatggttcatgcagaggactggcattgagaaaggggctgaaggggcagagtcc 350
|||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 291 ctggcatcatggttcatgcagaggactggcattgagaaag-----ga----gcagagtcc 341
Query: 351 atcatgacttctgttagcactagggcactggggactaaggcacctcaaatcaggagaact 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 atcatgacttctgttagcactagggcactggggactaaggcacctcaaatcaggagaact 401
Query: 411 ccaacactctcatcaaggactatgtgggcatgtttctgctcctgcggctgaagctggcag 470
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct: 402 ccaacactctcatcaagtactatgtgggcatgtttctgctcctgaggatgaagctggcag 461
Query: 471 ctctcagagagatgcagagtcaggcagggactcccacgattatgtacgagaattacatgt 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ctctcagagagatgcagagtcaggcagggactcccacgattatgtacgagaattacatgt 521
Query: 531 ttgaaaggtt----ctgtgagtccagagcttgtcagtcactgggaataagtctgagcctg 586
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 522 ttgaaaggttggttctgtgagtccagagcttgtcactcactgggaataagtctgagcctg 581
Query: 587 aggatgctatttggaaaaagggcagaggctgcagaa 622
||||||||||||||||||||||||||| ||||||||
Sbjct: 582 aggatgctatttggaaaaagggcagagactgcagaa 617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
