BAC Information

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BAC

Clone NameMSMg01-500B04
Chromosome11 (Build37)
Map Location 107,571,104 - 107,571,567
singlet/doubletsinglet
Overlap geneCacng1
Upstream genePecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz
Downstream geneCacng4, Cacng5, Prkca, Apoh, LOC100041381, Ccdc46, Olfr1397-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500B04.T7 (MSMg01no500_b04.b1)MSMg01-500B04.TJ (MSMg01no500_b04.g1)
ACCAG576001AG576002
length663658
length of high quality
(start - end)
147 (151 - 297)505 (154 - 658)
definitionCHROMAT_FILE: MSMg01no500_b04.b1 PHD_FILE: MSMg01no500_b04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:39 2005CHROMAT_FILE: MSMg01no500_b04.g1 PHD_FILE: MSMg01no500_b04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCACTATAGTCAGAGAATCCGCGGAATTCTATGCTCTTTCCTAAAGAG
GAGTGGTGAGGAGGAGGTGCAGCCACGTCTTCCAAGACAAAATTCAACCC
AAAATAACTGAAAACAGGACCCTGGATGGGACTCTGAGTAGTGCTGTCAC
CACAGAACAGTGCAGAAGCCCAGTGGCGGCCATCAGTGTTTGCTACCATG
TCCTTTTTTTTTTAAAAGATTTGATTTATTTTACTTATATGAGTGCACTG
TCACTGTCTTCAGACACACCAGAAGAGGGCATCGGATCCCATTATTTATG
GTTGTGAGCCACCNTATGGTTTCTGGGAATTGAACTCGTGATCTCTGGAT
GATCAACTATTGCTCTTACCCATTGAGCCATCGCTCCAGTCCCCTTTCGC
GTGTTGTTTTGTCACGTCTGCTTTTCCGTCTATGCGTTCTTTTTATTTTT
AATCTCTCTCCCGCTCTTGGGTTGCTTGTGAACTTGCCGTTATCCCACGC
GATCTATTTCGCCTCGTCCCCCTTTCGCCTTTTTTTTACCTCTTCGTTTC
TTGTACTCCGCACCCCTTGGGTTATTTGTCTGCCCTCTCCTCCCTTTGTT
TTTCGGTCCTTGATCTTTCATATTCTCCTTTCTTCCTTTTTTCCCGTCCT
GCGTTTTTATCAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTCAGCGGTGGTTAAGAGAGCACACGGCATCTTTATAAGCTTGGCA
AACGCATATACGAACATCCTATGTGAGACTTTCTCCCCAGCTCTAACCCA
ATAGTTCCTGAGGGGTTATACATATCAAGTTGTGTTCCATATGTTAACTC
TGCACTACCGGGTACCTGCTACCCTGGGGAACTTCTCAGTAATAACTCAG
AGCTATCCCGTCACCTCAGCTTCACCTTGGAGCTCCATTTGCCTGCTACT
CTGGTTCTTCGAGAATGCCACCCAGGATTCTGTACAGCTCGTGACTGAGC
CATACTGTGGGGTTAGTCAGCCATTCCCCCTGCCCCAGTCTCTAGGAAAG
TCTGAACTGGGCTCACTGTTTTTGTTTTGTTTCCTTTTGAGACAGGGGTT
CACTATGTAATCCTGGCTGGCCTGAAACTCACTCTGTAGACCAAACTGGC
CTGGAACTCACAGAGATCTGCCTGCCTCTGCCTCCCATGTGCTGGGATAA
AAGCGTGCACCACCACATGTGGCTGTGTATAAGGAGTAGCCCCGTTCACA
TTTCTACATCACTGCGGCTTGTATAAAGAAGAACCTTGTGATCAGTATAA
GGCAGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_b04.g1 MSMg01no500_b04.g1 CHROMAT_FILE:
MSMg01no500_b04.g1 PHD_FILE: MSMg01no500_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:39 2005
         (505 letters)



>mm_chr11_107571104_107572001
          Length = 898

 Score =  833 bits (431), Expect = 0.0
 Identities = 458/471 (97%), Gaps = 7/471 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttcctgaggggttatacatatcaagttgtgttccatatgttaactctgcactaccgggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||       |
Sbjct: 464 gttcctgaggggttatacatatcaagttgtgttccatatgttaactctgcac-------t 412

                                                                       
Query: 61  acctgctaccctggggaacttctcagtaataactcagagctatcccgtcacctcagcttc 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 acctgctaccctagggaacttctcagtaataactcagagctatcccgtcacctcagcttc 352

                                                                       
Query: 121 accttggagctccatttgcctgctactctggttcttcgagaatgccacccaggattctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 351 accttggagctccatttgcctgctactctggttcttcgagaatgccacccaggattctgc 292

                                                                       
Query: 181 acagctcgtgactgagccatactgtggggttagtcagccattccccctgccccagtctct 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 291 acagctcgtgactgagccatactgtggggttagtcagccatcccccctgtcccagtctct 232

                                                                       
Query: 241 aggaaagtctgaactgggctcactgtttttgttttgtttccttttgagacaggggttcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 aggaaagtctgaactgggctcactgtttttgttttgtttccttttgagacaggggttcac 172

                                                                       
Query: 301 tatgtaatcctggctggcctgaaactcactctgtagaccaaactggcctggaactcacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tatgtaatcctggctggcctgaaactcactctgtagaccaaactggcctggaactcacag 112

                                                                       
Query: 361 agatctgcctgcctctgcctcccatgtgctgggataaaagcgtgcaccaccacatgtggc 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 111 agatctgcctgcctctgcctcccatgtgccgggataaaagcgtgcaccaccacatgtggc 52

                                                              
Query: 421 tgtgtataaggagtagccccgttcacatttctacatcactgcggcttgtat 471
           ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 51  tgtgtataaggagtagccccgttcacatttctacatcactgcgtcttgtat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 898
Length adjustment: 10
Effective length of query: 495
Effective length of database: 888
Effective search space:   439560
Effective search space used:   439560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)