Query= MSMg01no500_b19.b1 MSMg01no500_b19.b1 CHROMAT_FILE:
MSMg01no500_b19.b1 PHD_FILE: MSMg01no500_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:41 2005
(629 letters)
>mm_chr11_104961831_104962859
Length = 1029
Score = 1152 bits (596), Expect = 0.0
Identities = 617/628 (98%), Gaps = 8/628 (1%)
Strand = Plus / Plus
Query: 5 cctgccaaaagctagcactgtaggcatgagccagcacactcagttctagccacggtttta 64
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 cctgccaaaagctagcactgtaggcatgagccagcacactcagttctagctacggtttta 264
Query: 65 aggcttggaggtcttggaatgtaacttctataccccctcgcccatggatgagggaactac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggcttggaggtcttggaatgtaacttctataccccctcgcccatggatgagggaactac 324
Query: 125 tgtatttgtgtgtgtttctctttaaggatatcagtggggtacatgtatgagtaagaaaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtatttgtgtgtgtttctctttaaggatatcagtggggtacatgtatgagtaagaaaat 384
Query: 185 aaataatttcttgagacattttctgggtggaaaccaagagtgagggtctcttctcaatat 244
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 aaataatttcttgagacattttctgggtggaaaccaagagtgagagtctcttctcaata- 443
Query: 245 ttt----attaaagtatttgttatgatgctcattttagaggatgccttcaagtaactgag 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ---ccaaattaaagtatttgttatgatgctcattttagaggatgccttcaagtaactgag 500
Query: 301 aggtaaaagggcatcacctgctgcacagagagcagaacaccaagaaaaccctcactgctt 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agataaaagggcatcacctgctgcacagagagcagaacaccaagaaaaccctcactgctt 560
Query: 361 ccactagtacagtagcaatatgcatctcccttctatcccaagcccagatgccagagaagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccactagtacagtagcaatatgcatctcccttctatcccaagcccagatgccagagaagt 620
Query: 421 tttgttagtattttaaagcatatggatcatggaatttgttttcctgtcttgggagctttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgttagtattttaaagcatatggatcatggaatttgttttcctgtcttgggagctttt 680
Query: 481 tattagtagtatttggtttggttttttaaaagcaaggtcttaatacatctgaggctggcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tattagtagtatttggtttggttttttaaaagcaaggtcttaatacatctgaggctggcc 740
Query: 541 tctaacttgttgtgtagctgaggttagccttgaatggtgggtacttgactctacttttta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctaacttgttgtgtagctgaggttagccttgaatggtgggtacttgactctacttttta 800
Query: 601 agtgtcatgacatgcaccttaagtccaa 628
||||||||||||||||||||||||||||
Sbjct: 801 agtgtcatgacatgcaccttaagtccaa 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_b19.g1 MSMg01no500_b19.g1 CHROMAT_FILE:
MSMg01no500_b19.g1 PHD_FILE: MSMg01no500_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:41 2005
(565 letters)
>mm_chr11_105043235_105044199
Length = 965
Score = 1007 bits (521), Expect = 0.0
Identities = 558/585 (95%), Gaps = 26/585 (4%)
Strand = Plus / Minus
Query: 1 aagtttcactcacacacacaagtaaggaattaggaaactgttagaatggtagaaaggcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 aagtttcactcacacacacaagtaaggaattaggaaactgttagaatggtagaaaggcat 811
Query: 61 ctttaaaaaaaaaaaaaaaaagactgagaag----------------taagtaggtaggt 104
||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 810 ctt--aaaaaaaaaaaaaaaagactgagaagaaaaccgagttttccctaagtaggtaggt 753
Query: 105 ggccttgctcaccacttgtcctgccctaataatcgaggtcggaaaggcagaggttacaat 164
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ggccttgctcactacttgtcctgccctaataatcgaggtcggaaaggcagaggttacaat 693
Query: 165 gcagtctctccccaatcccaaggtctctggaaacatttcccaaccctccatccccaggcc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gcagtctctccccaatcccaaggtctctggaaacatttcccaaccctccatccccaggcc 633
Query: 225 tggcccagaaaatgaggcccta----ttttttaccccatttaatgtcaactcatgatcag 280
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 632 tggcccagaaaatgaggccctagcag----ttaccccatttaatgtcaactcatgatcag 577
Query: 281 aaaatacccaccccatctctttccagaggggctttggaccgggatcctcccaatggcccc 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aaaatacccaccccatctctttccagaggggctttggaccgggatcctcccaatggcccc 517
Query: 341 aagccgggaagcaggaccgatggggcctggtcccggcgcccctcgccggctccaaacttt 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aagccgggaagcaggaccgatggggcctggtcccggcgcccctcgccggctccaaacttt 457
Query: 401 ccccaactccgggcccacctgtcacggacggagcgagggacagctctcgggggcgccccg 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ccccaactccgggcccacctgtcacggacggagcgagggacagctctcgggggcgccccg 397
Query: 461 taggctgccgaggcctccagctccccggagtcgcctctcccggcaggccgaccgccacac 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 taggctgccgaggcctccagctccccggagtcgcctctcccggcaggccgaccgccacac 337
Query: 521 tcccaggcctgggcctggtccatcttcggcccggcccctcggcga 565
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tcccaggcctgggcctggtccatcttcggcccggcccctcggcga 292
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
