BAC Information

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BAC

Clone NameMSMg01-500K05
Chromosome11 (Build37)
Map Location 66,963,765 - 66,963,988
singlet/doubletsinglet
Overlap genenone
Upstream geneDnahc9, Gm879, LOC668323, A530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3
Downstream geneMyh2, Myh1, Myh4, Myh8, Myh13, Gas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500K05.T7 (MSMg01no500_k05.b1)MSMg01-500K05.TJ (MSMg01no500_k05.g1)
ACCAG576431AG576432
length711720
length of high quality
(start - end)
239 (72 - 310)239 (74 - 312)
definitionCHROMAT_FILE: MSMg01no500_k05.b1 PHD_FILE: MSMg01no500_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:18 2005CHROMAT_FILE: MSMg01no500_k05.g1 PHD_FILE: MSMg01no500_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATAATTTGGGCGCTAAACGACTCACTATAGGTCGGACTCCGCGGAATT
CATGGCCNCTTCACACTAAGCAAGTGTTCTGCCCCTGAGCGACATCTCTA
GCACCCCTACACCCACACCATATTCTGAGACAAGGTCTCACAAAGGCACC
CAAGCTGATCTTAAGCTTATGATTCTCCTACATGTACCTGCAGAATATCT
GGGATTATAGTCACATGGCACTGTCTATTTAGTACCTCATTCTTTGGACT
CCTCACCACCAGTGCATTGGGACACATCTTTTAGGGTACTTTCTTACTAT
AGCCTTTGGTTATTCTTCAGATGAGCTTTGGGAAGATGAAAACCTAACAT
ACGAACAAAGAGAATATGATACATGAATATGAGATATTTATCATAGCACA
CATATATGTATATATACATATGCATAGTGGCACACACATGGAATCCCTGA
ACTCTGAGAACCTAATATAAAAGGATCAAGAGTTCAGGCTAGCCTGACTC
ATAGAGTGGGATCCCCACACACTCCATAATAATGCAAATATAACTTCCAG
GGATGTAAAGGGACATTATTTAATGACAAAGAGTCAATTATTCTAGACAA
CATGAAATTCCTAGAGCCGTATGTACCAGTGTGTTATATGATATGGCCAG
GATGGTTAAGTATTACATCCCTGACCCTGCAACTGTGTTTGTGTTCCGGC
CAGCCTTACTN
GGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCTCGAAATTCTGGGCACTCTTTGCATATTCTCATTCT
TTCTTATTGAATGGTAAGTGCTCTGAATAGTCTCACCCTTTCTTATTGAA
TGGTGAGCACTCTTTGCATAGTCTCACTCTCTCTTATTGAATGGTTGACA
CTCTTTGCATATGTTTACCCTTCCTTCCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTCTC
TTATTGACTGGTTTTTTTTTTTTTTCATATTCCTCAGAGCTGATCTCTTT
ATCAGCTGTGTGTTTTTGCAATAAACAAACACTTATAAGAAGAAACACCA
TCATTGTCAAAACAACCTAAACCTTACTTACGTTCTAACCACCAGGTAGC
AGGCTCATCAGGCCCCATATTTCCCCTTATACTCCTTCTGCATAATTTGG
TTCTCTGTATTTTTCTCTACGATGCTGTTACCCTGAGAATATTTCATAAG
TTGCCTATCTCTGCTCTATTGCTGCTCAGCCCTGTATGCACTATTATATA
TTACCCTTTGCTCACTGACAAGTGAATCTTTGGACTTTACTGTTGATACT
GGCCACCGCATGATTTCTTCTCTTTGCTTTTTGTGGCTTAATCTATGTGG
TCCTCTAATTTTGGGTCGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_k05.g1 MSMg01no500_k05.g1 CHROMAT_FILE:
MSMg01no500_k05.g1 PHD_FILE: MSMg01no500_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:18 2005
         (239 letters)



>mm_chr11_66963635_66964273
          Length = 639

 Score =  402 bits (208), Expect = e-117
 Identities = 224/238 (94%), Gaps = 14/238 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggcactctttgcatattctcattctttcttattgaatggtaagtgctctgaatagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tgggcactctttgcatattctcattctttcttattgaatggtaagtgctctgaatagtct 295

                                                                       
Query: 61  caccctttcttattgaatggtgagcactctttgcatagtctcactctctcttattgaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 caccctttcttattgaatggtgagcactctttgcatagtctcactctctcttattgaatg 235

                                                                       
Query: 121 gttgacactctttgcatatgtttacccttccttcctctctctctctctctctctctctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 gttgacactctttgcatatgtttacccttccttcctctctctctctctctctctctctct 175

                                                                     
Query: 181 ctctctctctctctctctctctctctctttctttctttctttctctcttattgactgg 238
           ||||||||||||||||||              ||||||||||||||||||||||||||
Sbjct: 174 ctctctctctctctctct--------------ttctttctttctctcttattgactgg 131


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)