BAC Information

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BAC

Clone NameMSMg01-500L03
Chromosome11 (Build37)
Map Location 90,400,989 - 90,401,220
singlet/doubletsinglet
Overlap geneStxbp4
Upstream geneAnkfn1, Pctp, Tmem100, LOC100039104, Mmd, Hlf
Downstream geneLOC100039267, Cox11, Tom1l1, LOC638903, EG664976
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500L03.T7 (MSMg01no500_l03.b1)MSMg01-500L03.TJ (MSMg01no500_l03.g1)
ACCAG576474AG576475
length675737
length of high quality
(start - end)
237 (65 - 301)78 (77 - 154)
definitionCHROMAT_FILE: MSMg01no500_l03.b1 PHD_FILE: MSMg01no500_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:22 2005CHROMAT_FILE: MSMg01no500_l03.g1 PHD_FILE: MSMg01no500_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTAATACGACTCACTAAAGTGCCGAGTCTGGGNGGAATTCAGACCCCAT
TCATAAATGAGAGATTATAAATGAAATGGTAGTTAGTTGGCAGTCAAGAG
CATTGACTCTCTTTCTCAAGTTACGAACACTTTCCTGGATGAAGACGGCG
ACAGCAGTGCTGTCTCCAGTTCTTCAGTTTATACGTCATCATCTCTCGAT
GACTTATACATAACACAACACAGTGTTTATGTAGATATTTTTTATAGCCT
ATTGTATTCACAATAAGGACAGGATTTTCCTTTACTGGTTTAGTACACAA
TTAAGTACTTCGGGCCTGAGCAGAAGCGAGGCGAGCGCCATACTGGATAG
TACTGGGGAGCATCAGGGTCACCTCTAGCAGGCTATGAGGACACATCACT
TCATCTCCCCAGGTTCAGCATGGTCCTGGTGTGGTTCGTGGAACTTCCTG
CAGTTTTGTTTGGTTCTTTTCAGTCATGGTTGGCTGAACTCACTGCTGTG
GAATCCTAGGAGACAGAGATGAGCTGCAAGAGGAAACTTACCTCTATGAA
ACCTAGGAGCCTTTCAGTGGACGCCTTGAATGCTTTCCGAGCCATTTCTG
AATTTCGCAATTGGCAGTCAATAATGTTGACTCTTTTTCTCAAGTCCTGG
ACACTTTCTTGGATAAAGACAGTAT
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCTGACATTCTTAACAATCACTAGTGGGTTAAAAAC
TTCCATGTGAGAGCTGGTGGGGCGGGGGGGGATGACTCANTTAGTTAAAC
GGCTTTCAAGAACTGATTTTGACCCCTAGAGGAGAAATCGAGCAAACAAA
TAAAACAACTAGGTGTAGTGATATGCTTGCAACCCCAGAACTTGGAGGAT
TTTTTATAGAATGGTCTGTGAGCTCACTGAATGGTCAACCTAGTCTACTT
GGAGTGTGTCCAGGAAATTTATAGTTGCGGACAAAAAAAAAAAANCAAGA
GGCGCCCATTACTTTATAAACCACACACATGTGTGCATGCACATGCACAT
ACACATATATAAAATACCACACCCCCCCCTTTTATCATAATGGATGAAAG
CTTGAACGCCTCCATCTGATTTTTAAAACCTGGAGGGTTTTGCTCTATTG
CTATAAGATATCCTATCCCATTACTCTTGGTTGGCCCGTTTCTTGTTCTA
TTTACGCCTCCAACACATTAATTTTGATCCAACCTCTGGTTCGGAGGGCT
CCTCCCATAGCATACTGTCCTCACATGTTACCCCGCTTCTACTTTTTTCT
TTTTCATCGTGGCCCTTATATCTTCTATTCTTTTGTTAATCCTTCTAACA
CAACCCTTTTGGGAAATTGTGTTACTCCGTATTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_l03.b1 MSMg01no500_l03.b1 CHROMAT_FILE:
MSMg01no500_l03.b1 PHD_FILE: MSMg01no500_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:22 2005
         (237 letters)



>mm_chr11_90400789_90401423
          Length = 635

 Score =  358 bits (185), Expect = e-103
 Identities = 222/235 (94%), Gaps = 4/235 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttataaatgaaatggtagttagttggcagtcaagagcattgactctctttctcaagttac 60
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 201 ttataaatgaaatggtagttagttggcagtcaagagcagtgactctctttctcaagtt-c 259

                                                                       
Query: 61  -gaacactttcctggatgaagacggcgacagcagtgctgtctccagttcttcagtttata 119
            ||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 260 tgaacattttcctggatgaagacggcgacagcagtactgtctccagttcctcagtttata 319

                                                                       
Query: 120 cgtcatcatctctcgatgacttatacataacacaacacagtgtttatgtagatatttttt 179
           || |||||||||||||||||||| ||||||||  |||||||||| ||||||||| |||||
Sbjct: 320 cgacatcatctctcgatgacttacacataaca--acacagtgttaatgtagatagttttt 377

                                                                  
Query: 180 atagcctattgtattcacaataaggacaggattttcctttactggtttagtacac 234
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 378 atagcctattgtattcacagtaaggacaggattttcctttactggtttagtacac 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 635
Length adjustment: 9
Effective length of query: 228
Effective length of database: 626
Effective search space:   142728
Effective search space used:   142728
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)