BAC Information

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BAC

Clone NameMSMg01-501H17
Chromosome11 (Build37)
Map Location 49,188,135 - 49,326,892
singlet/doubletdoublet
Overlap geneLOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1
Upstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390
Downstream geneOlfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501H17.T7 (MSMg01no501_h17.b1)MSMg01-501H17.TJ (MSMg01no501_h17.g1)
ACCAG577067AG577068
length700768
length of high quality
(start - end)		606 (17 - 622)557 (77 - 633)
definitionCHROMAT_FILE: MSMg01no501_h17.b1 PHD_FILE: MSMg01no501_h17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:19 2005CHROMAT_FILE: MSMg01no501_h17.g1 PHD_FILE: MSMg01no501_h17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,188,135 - 49,188,731)(49,326,336 - 49,326,892)
sequence
GACTCACTATATCGAGAGGATCCGCGGAATTCTACTCTTTTCTGAGTCTC
AGTCGTCAGAGCCCTCCCTGGAGGTCAGCTCTCCTTTGGTGGGGGTTTGG
GTCTCAGCTCTGCCTCCTGGCTGAAGATGAAGGCCTGGAAAACCCTGTCC
AAGAAGCTATGTTGTTCTGCATCCCATGCACTCTCCTGTGCAGATGCCAG
CTAGTGTTCTTAATCACTGAGCCATCTCTCCAGCTCTCTCTCCCATAAAT
TACATTTTGATCATATTCTTTTCCCTCCCCTAACTCCTTCCAGATATTCC
CCACCCTTTTTAAATACTTCTAACAAATGATTTATTTACCTTTATTTTAT
GCACGTCGGTGTTTTGTCTGCATGTTTATCTGTGTGAGTGTGTTGGATCC
AGTGGAACTGGAGTTACAGACAGTTATGAGCTGCCATGTGGGTGCTGAGA
ATTGAACTCAGGATCTTTGAAAGATTAATCAGTGATCTTAAATGCTGGGC
CATCTCTCCACACACACACACCCATACACACATATACCTCTTACTCACCT
GTGTTCTCTCTCTCTCTAAGCAAAGCGATCAAAACTCCAAATCAACCAAC
CAACCAACCAACCAACCAACCAACCAACCAACCAACCAAAAATAATTAAG
ACAAAAAATTACAAAAATAAACCAAAACAAAAGTGTGTGCATACCACACA


CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAGCAGTAAGGTCTGTGGGAA
CGAAGATCACCATAGAAATGTAAAACATTATCTTCAGTGGAGATGCTACT
CTTATTCCTACAACGATCTCCCAATAAAGCCACTATTGACAGATTAGCAA
TTTATGGGCTTACATTGCAGGACCAGCACTGAGTCAATGATGTCTGGACC
ACACTTTAACTGTGCTTGCTTAGTTATTTCATCTTGCTCCACCTCTTTCT
TTACTTAAACTTCAGCCTCAAGATGATTATCTAGTCACTGGATTTCTTTG
TCTGCTCCTCTTCCTGGTATGCACTGACTCCATATCCTTTCTCTGCATCT
CACTGTTTCTTGCCTTTAGTTGGCTTGTTGCTATTAGTGGCTGAATCTAG
CTGTTGGTACTGAAGGGGGTTGGGCTTTTGAATAAAAAAAATCTATCACA
GTGCACAAAATATGAATTAAAGTATACTCCCTAATGCTCTGTATACACCC
CAGAGTTGTAGGCTTTGCCACCCAGCTCAGCTCTACTCTTCAGGCCTGAG
TTTTCTTTCCTTAATTCTATTCTTACATAGTGCATAGAAGATTAGAGCAG
CAGCTATGTGGTTTTTGCTAGAAACACTTTCCTTTGCCCCTTTGTTTTGT
GACTTAATTCAGGCTACCCAATGCTCTGGCCAGTATATTTTCAACTCTGT
AGCACTCACTGCCTTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_h17.b1 MSMg01no501_h17.b1 CHROMAT_FILE:
MSMg01no501_h17.b1 PHD_FILE: MSMg01no501_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:19 2005
         (606 letters)



>mm_chr11_49187926_49188931
          Length = 1006

 Score = 1085 bits (561), Expect = 0.0
 Identities = 588/597 (98%)
 Strand = Plus / Plus

                                                                       
Query: 10  ggaattctactcttttctgagtctcagtcgtcagagccctccctggaggtcagctctcct 69
           ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 210 ggaattctactctttcctgagtctcagttgtcagagccctccctggaggtcagctctcct 269

                                                                       
Query: 70  ttggtgggggtttgggtctcagctctgcctcctggctgaagatgaaggcctggaaaaccc 129
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 270 ttggtgggggtttgggtctcagctctgcctcctggctgaagatgaaggcccggaaaaccc 329

                                                                       
Query: 130 tgtccaagaagctatgttgttctgcatcccatgcactctcctgtgcagatgccagctagt 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgtccaagaagctatgttgttctgcatcccatgcactctcctgtgcagatgccagctagt 389

                                                                       
Query: 190 gttcttaatcactgagccatctctccagctctctctcccataaattacattttgatcata 249
           |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 390 gttcttaatcactgagccatctctccagctgtctctcccataaattatattttgatcata 449

                                                                       
Query: 250 ttcttttccctcccctaactccttccagatattccccaccctttttaaatacttctaaca 309
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 450 ttcttttccctcccctaactccttccagatattccccacccttttttaatacttctaaca 509

                                                                       
Query: 310 aatgatttatttacctttattttatgcacgtcggtgttttgtctgcatgtttatctgtgt 369
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aatgatttatttacttttattttatgcacgtcggtgttttgtctgcatgtttatctgtgt 569

                                                                       
Query: 370 gagtgtgttggatccagtggaactggagttacagacagttatgagctgccatgtgggtgc 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gagtgtgttggatccagtggaactggagttacagacagttatgagctgccatgtgggtgc 629

                                                                       
Query: 430 tgagaattgaactcaggatctttgaaagattaatcagtgatcttaaatgctgggccatct 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tgagaattgaactcaggatctttgaaagattaatcagtgatcttaaatgctgggccatct 689

                                                                       
Query: 490 ctccacacacacacacccatacacacatatacctcttactcacctgtgttctctctctct 549
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 cttcacacacacacacccatacacacatatacctcttactcacctgtgttctctctctct 749

                                                                    
Query: 550 ctaagcaaagcgatcaaaactccaaatcaaccaaccaaccaaccaaccaaccaacca 606
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 750 ctaagcaaagcgatcaaaaccccaaatcaaccaaccaaccaaccaaccaaccaacca 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no501_h17.g1 MSMg01no501_h17.g1 CHROMAT_FILE:
MSMg01no501_h17.g1 PHD_FILE: MSMg01no501_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:19 2005
         (557 letters)



>mm_chr11_49326136_49327092
          Length = 957

 Score = 1038 bits (537), Expect = 0.0
 Identities = 552/557 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggagcagtaaggtctgtgggaacgaagatcaccatagaaatgtaaaacattatcttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 caggagcagtaaggtctgtgggaacgaagatcaccatagaaatgtaaaacattatcttca 698

                                                                       
Query: 61  gtggagatgctactcttattcctacaacgatctcccaataaagccactattgacagatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gtggagatgctactcttattcctacaacgatctcccaataaagccactattgacagatta 638

                                                                       
Query: 121 gcaatttatgggcttacattgcaggaccagcactgagtcaatgatgtctggaccacactt 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tcaatttatgggcttacattgcaggaccagcactgagtcaatgatgtctggaccacactt 578

                                                                       
Query: 181 taactgtgcttgcttagttatttcatcttgctccacctctttctttacttaaacttcagc 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 577 taactgtgcttgcttagttatttcatcttgctccacctctttctctacttaaacttcagc 518

                                                                       
Query: 241 ctcaagatgattatctagtcactggatttctttgtctgctcctcttcctggtatgcactg 300
           ||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 517 ctcaagatgaacatctagtcactggatttctttgtctgctcctcttcctgctatgcactg 458

                                                                       
Query: 301 actccatatcctttctctgcatctcactgtttcttgcctttagttggcttgttgctatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 actccatatcctttctctgcatctcactgtttcttgcctttagttggcttgttgctatta 398

                                                                       
Query: 361 gtggctgaatctagctgttggtactgaagggggttgggcttttgaataaaaaaaatctat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gtggctgaatctagctgttggtactgaagggggttgggcttttgaataaaaaaaatctat 338

                                                                       
Query: 421 cacagtgcacaaaatatgaattaaagtatactccctaatgctctgtatacaccccagagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cacagtgcacaaaatatgaattaaagtatactccctaatgctctgtatacaccccagagt 278

                                                                       
Query: 481 tgtaggctttgccacccagctcagctctactcttcaggcctgagttttctttccttaatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tgtaggctttgccacccagctcagctctactcttcaggcctgagttttctttccttaatt 218

                            
Query: 541 ctattcttacatagtgc 557
           |||||||||||||||||
Sbjct: 217 ctattcttacatagtgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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