Query= MSMg01no501_p23.b1 MSMg01no501_p23.b1 CHROMAT_FILE:
MSMg01no501_p23.b1 PHD_FILE: MSMg01no501_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:55 2005
(546 letters)
>mm_chr11_72355842_72356787
Length = 946
Score = 1048 bits (542), Expect = 0.0
Identities = 545/546 (99%)
Strand = Plus / Plus
Query: 1 caaatggtatctcgctgatttttcttggagacagggtctgaggcccatgtagcctctttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaatggtatctcgctgatttttcttggagacagggtctgaggcccatgtagcctctttc 260
Query: 61 tccctatgtagctgacaatgaccttgattctttctcctgactccaactcccagggattag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccctatgtagctgacaatgaccttgattctttctcctgactccaactcccagggattag 320
Query: 121 agtatataccactgtgcatatgccacccccaggacccccatacaccactcccccacacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtatataccactgtgcatatgccacccccaggacccccatacaccactcccccacacca 380
Query: 181 cccccatacacccacatacaccatctcatatacaccacctccatacacccacacacacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccccatacacccacatacaccatctcatatacaccacctccatacacccacacacacat 440
Query: 241 catcccatactctaccctgcatatgccacccctctacaccacctgccatgtactaccctc 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catcccatacactaccctgcatatgccacccctctacaccacctgccatgtactaccctc 500
Query: 301 atacaccatcccccttacatcacccccccatatatcactccctatacatcatcccccatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atacaccatcccccttacatcacccccccatatatcactccctatacatcatcccccatc 560
Query: 361 ccccatccccatgcaccacccccatacaccacccccagtactcctgatgatgttttgttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccccatccccatgcaccacccccatacaccacccccagtactcctgatgatgttttgttt 620
Query: 421 gtcttcttctgttagagacggagtctccctatgcaaccctgtttggcttggagcccacta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcttcttctgttagagacggagtctccctatgcaaccctgtttggcttggagcccacta 680
Query: 481 tgtagccaggctggcctggaactcatggagattcatctgcctctgtctacacaagttcac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtagccaggctggcctggaactcatggagattcatctgcctctgtctacacaagttcac 740
Query: 541 accacc 546
||||||
Sbjct: 741 accacc 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_p23.g1 MSMg01no501_p23.g1 CHROMAT_FILE:
MSMg01no501_p23.g1 PHD_FILE: MSMg01no501_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:55 2005
(473 letters)
>mm_chr11_72407572_72408444
Length = 873
Score = 830 bits (429), Expect = 0.0
Identities = 461/479 (96%), Gaps = 12/479 (2%)
Strand = Plus / Minus
Query: 1 atggccagcctgggctagatagggagttcaaagctagcctgggctacattgggtacagct 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 722 atggccagcctgggctagatagggaattcaaagctagcctgggctacattgggtacagct 663
Query: 61 aaaagagctagagttagtggaaggaaaaggaaaaagagggggaaggtggggagttgagca 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 662 aaaagagctagagttagtggaaggaaaaggaaaaagagggggaagatggggagttgagca 603
Query: 121 tgttgatggggaatattgaaatgtgctggtgctgagatccacagtccaaggagagacagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tgttgatggggaatattgaaatgtgctggtgctgagatccacagtccaaggagagacagc 543
Query: 181 cttctgggggtgggagggtttgaggaaactgtctttaggaagcaccagattcaggtgaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 cttctgggggtgggagggtttgaggaaactgtctttaggaagcaccagattcaggtgaga 483
Query: 241 tcaggtggag------ttttttctgtgaacctctaatctgcacccctcatcaggtcacaa 294
|||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tcaggtggagaggggc------ctgtgaacctctaatctgcacccctcatcaggtcacaa 429
Query: 295 gcaggaacaccatcctcgtcttttctccagtccatcaccaaaacttaaatgtccaangat 354
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 428 gcaggaacaccatcctcgtcttttctccagtccatcaccaaaacttaaatgtctaaggat 369
Query: 355 gctcgctcctcaatccaaacctgaatggcctccacaaccctaggaagggtaggctggcca 414
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 368 gctcgctcctcaatccaaacctgaatggcctccacaaccctaggaagggtacgctggcca 309
Query: 415 ctgacttggcttttcccatggctccctccctctagcttctgtagacnaggcataactat 473
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 308 ctgacttggcttttcccatggctccctccctctagcttctgtagacaaggcataactat 250
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
