Query= MSMg01no502_a02.b1 MSMg01no502_a02.b1 CHROMAT_FILE:
MSMg01no502_a02.b1 PHD_FILE: MSMg01no502_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:56 2005
(547 letters)
>mm_chr11_112090744_112091692
Length = 949
Score = 980 bits (507), Expect = 0.0
Identities = 538/549 (97%), Gaps = 2/549 (0%)
Strand = Plus / Plus
Query: 1 gagaataaaatagtcataggaggcagatggagggaaggaactgagtgggagagaggatat 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagaataaaatagtcacaggaggcagatggagggaaggaactgagtgggagagaggatat 260
Query: 61 ggaggggaataagggcaagttcaagatcagatgtggggagagataagagaaacagccaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaggggaataagggcaagttcaagatcagatgtggggagagataagagaaacagccaga 320
Query: 121 gggtcagtagaatgaatggaaatctgcagttggtgagggttgggggatggggacatctct 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 gggtcagtagaatgaatggaaatctgcaattggtgagggttgggggatggggacatctct 380
Query: 181 agaacatggagagacctaggatggcagggctcccagaagtcaatgtgggtgaccttagct 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 agaacatggagagacctaggatggcaaggctcccagaagtcaatgtgggtgaccttagct 440
Query: 241 gagacccatagcagaggggctacggaaccagaagaggtcatcttctgtagtcaggcagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagacccatagcagaggggctacggaaccagaagaggtcatcttctgtagtcaggcagga 500
Query: 301 ccgccagtggagcaataaggacactatggaacattattcacccttcagtgagaagggagt 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaccagtggagcaataaggacactatggaacattattcacccttcagtgagaagggagt 560
Query: 361 cctgcc--tgatgatgatgtcactgaatgccagttaccatatgttagaagaattatgtca 418
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctgccatttatgatgatgtcactgaatgccagttaccatatgttagaagaattatgtca 620
Query: 419 agtgcacagaaaccaatattaaaggatctaacttctatgcaaaatcccaatctttgagaa 478
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcgcacagaaaccaatattaaaggatctaacttctatgcaaaatcccaatctttgagaa 680
Query: 479 gtagaaggtgaaacagtggtgactaggttctgacagtgtagcgatatgaaggcacattgg 538
| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 gcagaaggtgaaacactggtgactaggttctgacagtgtagcgatatgaagggacattgg 740
Query: 539 aaatatctg 547
|||||||||
Sbjct: 741 aaatatctg 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 949
Length adjustment: 10
Effective length of query: 537
Effective length of database: 939
Effective search space: 504243
Effective search space used: 504243
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_a02.g1 MSMg01no502_a02.g1 CHROMAT_FILE:
MSMg01no502_a02.g1 PHD_FILE: MSMg01no502_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:56 2005
(651 letters)
>mm_chr11_112251337_112252389
Length = 1053
Score = 1158 bits (599), Expect = 0.0
Identities = 639/653 (97%), Gaps = 2/653 (0%)
Strand = Plus / Minus
Query: 1 cagtttcaactgggttactt--aatggagtacaggcaaacctagcacacctagagagaaa 58
|||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||
Sbjct: 853 cagtttcaactgggttacttaaaatgaaatacaggcaaacctagcacacctagagagaaa 794
Query: 59 taggttcctaccaaaagtgttgcgcatatttgaccacctcagttctttttcaaaaatggg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 taggttcctaccaaaagtgttgcgcatatttgaccacctcagttctttttcaaaaatggg 734
Query: 119 agattccaaatcagtacaaggaagcagagaaaagcgagacctacttggcctgcagttgac 178
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 733 agattccaaatgagtacaaggaagcagagaaaagcaagacctacttggcctgcagttgaa 674
Query: 179 gttgcttcagatgcacatgaagaaggacagagttcctcctctgctcccaaagaagatgtg 238
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gttgcttcagatgcgcatgaagaaggacagagttcctcctctgctcccaaagaagatgtg 614
Query: 239 acagtctctacacctctgtgccatcacacaacccaacatgcacccgtaggctttgctcat 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 acagtctctacacctctgtgccatcacacaacccaacatgcacccgtaggctttgctcat 554
Query: 299 tccaaaaacatgctagcttcaatggaaggtctatggtgagatactcagtatagagcagaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 553 tccaaaaacatgctagcttcaatggaaggtctatggtgagatactcagtataaagcagaa 494
Query: 359 aaaagaattcgatttgccacttgcaagttagactctggactactgtgtgtaatgaaaata 418
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aagagaattcgatttgccacttgcaagttagactctggactactgtgtgtaatgaaaata 434
Query: 419 aaaaagactggagaaatactggggtcactgggagaggattggaaagaaccaggcctcttg 478
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 433 aaaaagactggagaaatactggggtcgctgggaaaggattggaaagaaccaggcctcttg 374
Query: 479 gtatcttattgcagaacgcatctagggagattaaaatttgaacgtatactggcatatacc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gtatcttattgcagaacgcatctagggagattaaaatttgaacgtatactggcatatacc 314
Query: 539 aacatggataaaaccacatgacatcatatgtcaattgcattcgagtatgaagaactactg 598
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 313 aacatggataaaaccacatgacatcatatgtcaattgcatttgagtatgaagaactactg 254
Query: 599 ggatgttttcttttacaatatcccttaataatttctatatatagtttatatga 651
|| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggctgttttcttttacaatatcccttaataatttctatatatagtttatatga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1053
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1043
Effective search space: 668563
Effective search space used: 668563
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
