BAC Information

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BAC

Clone NameMSMg01-502D19
Chromosome11 (Build37)
Map Location 51,286,217 - 51,448,256
singlet/doubletdoublet
Overlap geneCol23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b
Upstream geneAdamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4
Downstream geneC330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502D19.T7 (MSMg01no502_d19.b1)MSMg01-502D19.TJ (MSMg01no502_d19.g1)
ACCAG577639AG577640
length740766
length of high quality
(start - end)
456 (60 - 515)453 (73 - 525)
definitionCHROMAT_FILE: MSMg01no502_d19.b1 PHD_FILE: MSMg01no502_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:13 2005CHROMAT_FILE: MSMg01no502_d19.g1 PHD_FILE: MSMg01no502_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,286,217 - 51,286,660)(51,447,916 - 51,448,256)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGCG
AATTTCACCTTGTACTATGGCTTAGCCCTGATGTGAGCTCTGAGTTCCAA
TGTCCCACTAAGGTGCATCGGTAGTCCAAGATTGAGTGATGAGTCCCAGG
GGCAGAGGGAACTAATGTCTGGCCAGAAGCTGGGACCCAACACATAGAAA
AGGCTGCACTTCCTGTGTTTGGTCTTTAAGTTGCACCTGGGCCCACAATC
AAGCTGTGTTCCAACCCTACAGCCACCCGGTTCCACACATGCGCTCCCTC
TATCCCTTGGTTTTCGGTAGATATGGGAATGATATCTCCATTAAATGGCC
TCCAGGCAAGAGGATGAGCCACCTCGAAGTTTGGCTGAGCATTAGAAAAA
GAAACACCCCGTTCCTTGTGTTCCCCCTCAACATCCCTGCCACCCCATGC
AGGGATAGTAGCCAGAAGAAACAGGACATAGGCAATGTTCTTGCTTCCTT
AGTAAGAGTCCTGTATCTGTAGGAGGGAGATGGGAACCCTCTGTGTAAAT
ATCCAAGCTCCTTATCTCCTGCCAGGTATTTACAGGGCAGTGCCTAGGGT
TCCCTGTGTTATTTCAGCTTGTGGTTTGCAGACAGAATTCCAGATTGAGG
TGGAAGGAAACCCTTAGGGGAAGCGGGAGTACCAGGCTGCAGTGAGCCTG
GCTGCTTACCCATCTGACTGGAGTTCTCTCCACCCTCTGC
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTGTGTAGACCAGGCCAGTCTGAAGTC
AGACAGATCTGCCTGCCTCTGCATCCTTAGTTCTGGGATTAAAGGTGTGA
GTCACCACACCCAACAGATATTTTTTTTAAACTTCTTATTTCTAGGTGTA
TGGGGACCTTTTGCCTTCATGTGTGTCTGTGCACCACGAGATGCAGTGGA
TGAAGAGGGCTTCAGGGTCTCTAGAACTGGACTTACAGGAAGTTGTGACT
GCCATGTGGGTGCTGAGAACAGAATCTGGGCTATTTGCAAGAGCAGCAAG
TCCTCCTTAAACACCGAGCCATCTCTCCAGCCCCTCTAGTGTGAAGTTTT
AACATTTCCTTCATATCTCTTTCTATCCACTGGAAGCTTTTGATTCAGGC
CTTCTTAGCCAAAGGCTAGGAAATGGAGGTATTGTTTAATCAGTTAGGCC
TACTCAGCCCCGTGATGGGCTAGGTCCTGCAGGGAGGGAGGGGACAAGAC
CAGTCTCCAGGCTTTGTTTAGCTGCTAGTCCAGTTGAGACACATCTGAAG
AAATAGTCAGGAGGATGTGGAAGTGTGTGGAACCGACACATCAGATTTGT
GATGCAGAAAAGAAGGGTGCACAAGGAAGATAGAGCCGTGAGAAGAGGCC
TGAGCTGGAGCCCAGGAAGCCATATAAAATGGTGGATGTGACCAGGGATG
TAGCACATGCCTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_d19.b1 MSMg01no502_d19.b1 CHROMAT_FILE:
MSMg01no502_d19.b1 PHD_FILE: MSMg01no502_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:13 2005
         (456 letters)



>mm_chr11_51286017_51286872
          Length = 856

 Score =  781 bits (404), Expect = 0.0
 Identities = 434/444 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtactatggcttagccctgatgtgagctctgagttccaatgtcccactaaggtgcatc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ttgtactatggcttagccctgatgtgagctctgagttccaatgccccactaaggtgcatc 260

                                                                       
Query: 61  ggtagtccaagattgagtgatgagtcccaggggcagagggaactaatgtctggccagaag 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ggtagtccaagattgagtgatgagtcccaggggcagagggagctaatgtctggccagaag 320

                                                                       
Query: 121 ctgggacccaacacatagaaaaggctgcacttcctgtgtttggtctttaagttgcacctg 180
           |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 321 ctgggacccaacacatagaaaaggctgcacttcccgtgtttgatctttaagttgcacctg 380

                                                                       
Query: 181 ggcccacaatcaagctgtgttccaaccctacagccacccggttccacacatgcgctccct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 ggcccacaatcaagctgtgttccaaccctacagccacccggttccacacacgcgctccct 440

                                                                       
Query: 241 ctatcccttggttttcggtagatatgggaatgatatctccattaaatggcctccaggcaa 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 ctatcccttgggcttcggtagatatgggaatgatatctccattaaatggcctccaagcaa 500

                                                                       
Query: 301 gaggatgagccacctcgaagtttggctgagcattagaaaaagaaacaccccgttccttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 gaggatgagccacctcgaagtttggctgagcattagaaaaagaaacaccccattccttgt 560

                                                                       
Query: 361 gttccccctcaacatccctgccaccccatgcagggatagtagccagaagaaacaggacat 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgccccctcaacatccctgccaccccatgcagggatagtagccagaagaaacaggacat 620

                                   
Query: 421 aggcaatgttcttgcttccttagt 444
           ||||||||||||||||||||||||
Sbjct: 621 aggcaatgttcttgcttccttagt 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no502_d19.g1 MSMg01no502_d19.g1 CHROMAT_FILE:
MSMg01no502_d19.g1 PHD_FILE: MSMg01no502_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:13 2005
         (453 letters)



>mm_chr11_51447404_51448256
          Length = 853

 Score =  659 bits (341), Expect = 0.0
 Identities = 341/341 (100%)
 Strand = Plus / Minus

                                                                       
Query: 113 cttatttctaggtgtatggggaccttttgccttcatgtgtgtctgtgcaccacgagatgc 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 cttatttctaggtgtatggggaccttttgccttcatgtgtgtctgtgcaccacgagatgc 794

                                                                       
Query: 173 agtggatgaagagggcttcagggtctctagaactggacttacaggaagttgtgactgcca 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 agtggatgaagagggcttcagggtctctagaactggacttacaggaagttgtgactgcca 734

                                                                       
Query: 233 tgtgggtgctgagaacagaatctgggctatttgcaagagcagcaagtcctccttaaacac 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tgtgggtgctgagaacagaatctgggctatttgcaagagcagcaagtcctccttaaacac 674

                                                                       
Query: 293 cgagccatctctccagcccctctagtgtgaagttttaacatttccttcatatctctttct 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cgagccatctctccagcccctctagtgtgaagttttaacatttccttcatatctctttct 614

                                                                       
Query: 353 atccactggaagcttttgattcaggccttcttagccaaaggctaggaaatggaggtattg 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 atccactggaagcttttgattcaggccttcttagccaaaggctaggaaatggaggtattg 554

                                                    
Query: 413 tttaatcagttaggcctactcagccccgtgatgggctaggt 453
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tttaatcagttaggcctactcagccccgtgatgggctaggt 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)