BAC Information

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BAC

Clone NameMSMg01-502G04
Chromosome11 (Build37)
Map Location 97,829,684 - 97,830,320
singlet/doubletsinglet
Overlap genePlxdc1
Upstream geneSp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47
Downstream geneArl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502G04.T7 (MSMg01no502_g04.b1)MSMg01-502G04.TJ (MSMg01no502_g04.g1)
ACCAG577752AG577753
length740744
length of high quality
(start - end)
420 (317 - 736)625 (74 - 698)
definitionCHROMAT_FILE: MSMg01no502_g04.b1 PHD_FILE: MSMg01no502_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:24 2005CHROMAT_FILE: MSMg01no502_g04.g1 PHD_FILE: MSMg01no502_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:24 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGAT
GCTGCTGTGACCAAGGGCATGACAGTCCAGGAGGCCGGCTTGGGTGGTGC
CCCTGGCATCTGGGTGAGGAGGAGAGAAGCGTCAGGGAGACTTTTTGAAG
CAACAGCATCTTGTCAGATTTGAAGGATGAGGAGAAGCTCACGGGGGAGC
GGGTTACTTAGGAGCACAGCGTTCTTGGCTGAGAAGACTTTGTGAATCTA
TGGTGGCTGAATGGCAGGCCTAGGTCCTAGAGGGCCAGGAGGGATGTGAG
AGAAAGAGTTTTTATAACCTGGCCGTAAGGGCCCTGGGATCAGCACCAGG
GGTGTGGTGAGAGGGACGCAGGAATGATGGACCACGTGGGCATAAGAGCT
CTCAGATCAGCTGCAGGGGTGTGGTGAGAGGGACGCAGGAATGATGGACC
ACATGGGCATAAGAGCTCTCAGATCAGCTGCAGGGGTGTGGTGAGAGGGA
CGCAGGAATGATGGACCACATGGGCATAAGAGCTCTCAGATCAGCTGCAG
GGGTGCGGTGAGAGGGATGCAAGAATGATGGATCACATGGGTCTTCCATG
CGGCTTGCTCTAGCTCGAGTGTGTGGGCAACTGGCTCTAGGGCATACTGG
GTGGAAGGTGAAATGGATACCCAGAGAGAGCATCAGCAGTCAGAACAATA
TGGAGGCAGTATGGCTAGCTTGAGTTGGGTCAGGCCCCGN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAACTCCCAAAAGCACATTTGTGATTGT
GATCCTTGCACACTTGTGATGGCACACACACACACACACACACAAATACA
GTAACTAAAAGAAAGAAATGTTTGCCGGTGAGGTGAATGGGGCAGAGATC
TGCACCCAGGAACGGTTCCGTTAACATTATCTCCTATTTTCCTCTCACCT
CAGCTGTGCACTTGATAAGGAACTCTGGTATAATGTACCACTGATGGGAC
CTTTCAGAATGGTGCGATTTTTATGAGAGATTCACGAAGTTCTTGAATGA
TTAGCTTGATTACCACAAGAGCAAGCTGTTAGAAGGTGAGACCACCCTGT
GTTTTCTCTCTTCTGCAAACAACTCCTTCTGAATTTAAAATATGTAGCCC
TTCACCTTCAGCCAGTGCGCTGTGGTCACCGTCATGCTCGCCACTGCCCT
CTGTCGCTATGCCGCAGCCGCGGCTGCCAGAGGCCTCCTGCACCCCGTCT
CGGCTCTCAGCCCCGCCACCACCACTGTCTGTTCCATTTGCTGCTATTCT
CATGGGTCACACGAGACAGATGAGGAGTTTGATGCTTGCTGGGTGACATA
CTTCAACAAACCAGACACTGATGCCTGGGAATTGCGTAAAGGGATGAATA
CACTTGTTGGCTATGATCTGGTTTCTGAGCCCCAAATCAGTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_g04.g1 MSMg01no502_g04.g1 CHROMAT_FILE:
MSMg01no502_g04.g1 PHD_FILE: MSMg01no502_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:24 2005
         (625 letters)



>mm_chr11_97829504_97830520
          Length = 1017

 Score = 1062 bits (549), Expect = 0.0
 Identities = 609/645 (94%), Gaps = 28/645 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactcccaaaagcacatttgtgattgtgatccttgcacacttgtgatggcacacacacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aactcccaaaagcacatttgtgattgtgatccttgcacacttgtgatggcacacacacac 240

                                                                       
Query: 61  acacacacaca--------------------aatacagtaactaaaagaaagaaatgttt 100
           |||||||||||                    ||||||||||| |||||||||||||||||
Sbjct: 241 acacacacacacacacacacacacacacacaaatacagtaaccaaaagaaagaaatgttt 300

                                                                       
Query: 101 gccggtgaggtgaatggggcagagatctgcacccaggaacggttccgttaacattatctc 160
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 301 gccggtgaggtgaatggggcagagatctgcaccca--aacggttccgttaacattatctc 358

                                                                       
Query: 161 ctattttcctctcacctcagctgtgcacttgataaggaactctggtataatgtaccactg 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctattttcctctcacctcagctgtgcacttgataaggaactctggtataatgtaccactg 418

                                                                       
Query: 221 atgggacctttcagaatggtgcgatttttatgagagattcacgaagttcttgaatgatta 280
           |||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||
Sbjct: 419 atgggacctttcagaatggtgcgatccttaggagagattcacgaagttcttgaatgatta 478

                                                                       
Query: 281 gcttgattaccacaagagcaagctgttagaaggtgagaccaccctgtgttttctctcttc 340
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 479 gcttgattaccacaagagcaagctgttagaaggtgagaccaacctgtgttttctctcttc 538

                                                                       
Query: 341 tgcaaacaactccttctgaatttaaaatatgtagcccttcaccttcagccagtgcgctgt 400
           |||||||   ||||   ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 539 tgcaaac---tcct---gaatttaaaatatgtagcccttcaccttcagccagtgtgctgt 592

                                                                       
Query: 401 ggtcaccgtcatgctcgccactgccctctgtcgctatgccgcagccgcggctgccagagg 460
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 593 ggtcaccgtcatgctcgccactgccctctgtggctatgccgcagccgcggctgcccgagg 652

                                                                       
Query: 461 cctcctgcaccccgtctcggctctcagccccgccaccaccactgtctgttccatttgctg 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 cctcctgcaccccgtctcggctctcagccccgccaccaccactgtctgttccatttgctg 712

                                                                       
Query: 521 ctattctcatgggtcacacgagacagatgaggagtttgatgcttgctgggtgacatactt 580
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ctattctcatgggtcacacgagacagatgaggagtttgatgcttgctgggtgacatactt 772

                                                        
Query: 581 caacaaaccagacactgatgcctgggaattgcgtaaagggatgaa 625
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 caacaaaccagacactgatgcctgggaattgcgtaaagggatgaa 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1017
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1007
Effective search space:   619305
Effective search space used:   619305
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)