BAC Information

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BAC

Clone NameMSMg01-502G12
Chromosome11 (Build37)
Map Location 27,299,626 - 27,300,240
singlet/doubletsinglet
Overlap genenone
Upstream geneFancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
Downstream geneLOC100042377, EG626571, Ccdc85a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502G12.T7 (MSMg01no502_g12.b1)MSMg01-502G12.TJ (MSMg01no502_g12.g1)
ACCAG577768AG577769
length738748
length of high quality
(start - end)
321 (318 - 638)609 (76 - 684)
definitionCHROMAT_FILE: MSMg01no502_g12.b1 PHD_FILE: MSMg01no502_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:26 2005CHROMAT_FILE: MSMg01no502_g12.g1 PHD_FILE: MSMg01no502_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATTTGCGGCGCTAAACGACTCCTTTTTCGAAATGACCGCGGAANCAA
TGATTCCCAAAAACAGCATTCCCAAACTAANGGGACACAATGAAAGCAGG
GCTAAGATGAAAGCTTATAGCATTATGTGTCTTCATAAGGAAATTGGAGA
GATCTCAAACTAGCAATTTTTATGTTCACCTGAAAACTCTAAAATCAAAA
AGCAAGCAAATAAACAAATAGAAAAATAATCAACCAACCATTTTTAAACA
AAAATTCCTCACAAGAGGAGTAGACAGCAGGAAATAATAAAACTTAAGGC
TTAACTTTAGCTAGGAGAAACAGAGAACAATACAAATCATCAAAGAACCA
AGATATTTTGTTTTTGAGAAAACTTACAAGACAACAGATCCTTAGCCAAA
CTAACTAAAAAGAAGAGAGACAGTATACAAATTAACAGTATGGGAAATGA
AAAAAGACAGAAAACAGACACTGAGGAAATTCAAAGAATTATCATGTCTT
ACTTCACAAGCCTATACTCTGCAAAGATGGAAAACCTAAGTGAAATGGAT
GATTTTCTAGATAGATACTACTTATCAAATTTAAATCAAGATCAACAATT
AATAAACGAAGCCTTAGGGCACTTAAACATTTCTGTAAGGCTAGGGATTT
CATCATTAGGAGAAAATGACAGGCTATAGAATGGGAAATTATCTTCACCA
AGCTTACATCCAACACAGGTCTCATATCCAACATATAN
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGTCCCGAGAAATTCCACACCCCTAAGCCCCGTACCCCAT
AAAAACCCCTAGCTTTCAAGCCTCGTGGCCGACATCCGTTATCTCCTGTG
TGGGATACATGTCGGTCCGGAGCTCCGTAATTAAACGTCCTCATGTAATT
ACATCAAGAGATGGTCCTTCGTGATTTATTTGGGTGCACACCGAATCGGT
AATTGGGTGGGGGTTTCCCCACTAGATCTAACACTAACTATCTAAGAGGA
AGTGACTAGTAAGTTATATATTATCTAAATACTAATCGTTTTAAAGCCAC
TTAAGTTCTACTAAATTAAAAATCCTAATTAAAATCATCATCATCAATAA
TAATAATAATAATTCTAATAAATTAAAAATCCTAATTTTTCATAAGCTAG
CCTAATTCTTCTATAGGAGGTTGGGTTTTTATGCAGTCACCACAAGTGAC
ATGCTTAGCCCTCACTGTATATCTGTACTCCAACTTTTAATTTGGCCCCC
TGTCATTAGAAATAAAAAACATACTTCTAATCTCAAATGCAGATAGACTT
TCATGCACGTAAGTATTGAGCAAGGATTTTGGAAAGCCTCTTTTAAATAA
TCAAACATATATGTGGCTGGCATAATTTTACTGGTGTGCCCTTTATACTA
AACTACCAGGTCAGTCCTCTAGAGCATAAGTTTAGCTGCCACTTTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_g12.g1 MSMg01no502_g12.g1 CHROMAT_FILE:
MSMg01no502_g12.g1 PHD_FILE: MSMg01no502_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:26 2005
         (609 letters)



>mm_chr11_27299432_27300440
          Length = 1009

 Score = 1073 bits (555), Expect = 0.0
 Identities = 598/615 (97%), Gaps = 6/615 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacacccctaagccccgtaccccataaaaacccctagctttcaagcctcgtggccgacat 60
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 cacacccctaaaccctgtaccccataaaaacccctagctttcaagcctcgtggccgacat 254

                                                                       
Query: 61  ccgttatctcctgtgtgggatacatgtcggtccggagctccgtaattaaacgtcctcatg 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ctgttatctcctgtgtgggatacatgtcggtccggagctccgtaattaaacgtcctcatg 314

                                                                       
Query: 121 taattacatcaagagatggtccttcgtgatttatttgggtgcacaccgaatcggtaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||
Sbjct: 315 taattacatcaagagatggtccttcgtgatttatttgggtgcacaccaaattgggaattg 374

                                                                       
Query: 181 ggtgggggtttccccactagatctaacactaactatctaagaggaagtgactagtaagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggtgggggtttccccactagatctaacactaactatctaagaggaagtgactagtaagtt 434

                                                                       
Query: 241 atatattatctaaatactaatcgttttaaagccacttaagttctactaaattaaaaatcc 300
           | | || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaaaataatctaaatactaatcgttttaaagccacttaagttctactaaattaaaaatcc 494

                                                                       
Query: 301 taattaaaatcatcatcatcaataataataataataat--tc----taataaattaaaaa 354
           ||||||||||||||||||||||||||||||||||||||  |     ||||||||||||||
Sbjct: 495 taattaaaatcatcatcatcaataataataataataataataataataataaattaaaaa 554

                                                                       
Query: 355 tcctaatttttcataagctagcctaattcttctataggaggttgggtttttatgcagtca 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tcctaatttttcataagctagcctaattcttctataggaggttgggtttttatgcagtca 614

                                                                       
Query: 415 ccacaagtgacatgcttagccctcactgtatatctgtactccaacttttaatttggcccc 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ccacaagtgacatgcttagccctcactgtatatctgtactccaacttttaatttggcccc 674

                                                                       
Query: 475 ctgtcattagaaataaaaaacatacttctaatctcaaatgcagatagactttcatgcacg 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ctgtcattagaaataaaaaacatacttctaatctcaaatgcagatagactttcatgcacg 734

                                                                       
Query: 535 taagtattgagcaaggattttggaaagcctcttttaaataatcaaacatatatgtggctg 594
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 735 taagtattgagcaaggattttggaaagcctcttttaaataatcaaacttatatgtggctg 794

                          
Query: 595 gcataattttactgg 609
           |||||||||||||||
Sbjct: 795 gcataattttactgg 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)