Query= MSMg01no502_g14.b1 MSMg01no502_g14.b1 CHROMAT_FILE:
MSMg01no502_g14.b1 PHD_FILE: MSMg01no502_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:26 2005
(595 letters)
>mm_chr11_57951190_57952184
Length = 995
Score = 851 bits (440), Expect = 0.0
Identities = 498/542 (91%), Gaps = 40/542 (7%)
Strand = Plus / Minus
Query: 62 aaagagcacaat--------agtcaaagaatccaaagcggggtgggggggagccgggctg 113
|||||||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 911 aaagagcacaatagaacacaagtcaaagaatccaaaggggggttggggggagccgggctg 852
Query: 114 agttcgaggacagccagggctacacagggaaaccctgtctcaaaaaaccaaaaaaaaaag 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 agttcgaggacagccagggctacacagggaaaccctgtctcaaaaaaccaaaaaaaaaag 792
Query: 174 aatccaaagaaagtgagtcctgtgctcctccgcggcctgctgttgttttctcccatgttt 233
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 791 aatccaaagaaagtgagtcctgtgctcct------cctgctgttgttttctcccatgtt- 739
Query: 234 tttggtttttttttgttttgttttgtttttttttttttacaggtatggcctggtttttga 293
|| ||||||||||||||||||||||||||||||||
Sbjct: 738 -------------------------ttcttttttttttacaggtatggcctggtttttga 704
Query: 294 gttttgaggcggcttagggccagaagttgaattcaattgtaaattagggtttggtttggt 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gttttgaggcggcttagggccagaagttgaattcaattgtaaattagggtttggtttggt 644
Query: 354 tttattttgttttgtttaaatagtctcagagtggatactttgagtagcgcccagagcctt 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tttattttgttttgtttaaatagtctcagagtggatactttgagtagcgcccagagcctt 584
Query: 414 cacatgctagaaagtcctccaccgttgagtcacacacagacataattgactgtttttaaa 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cacatgctagaaagtcctccaccgttgagtcacacacagacataattgactgtttttaaa 524
Query: 474 ggatagagagtgagtactgaatccttttgtgataggtctcagggaagtcttcatttttat 533
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 523 ggatagagagtgagtactgaatccttttgtgataggtctcagggaagccttcatttttat 464
Query: 534 ttatttatttttttaagagaccctcctgtttctgtctgcttagcactgggattaaaggtg 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttatttatttttttaagagaccctcctgtttctgtctgcttagcactgggattaaaggtg 404
Query: 594 tg 595
||
Sbjct: 403 tg 402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_g14.g1 MSMg01no502_g14.g1 CHROMAT_FILE:
MSMg01no502_g14.g1 PHD_FILE: MSMg01no502_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:26 2005
(569 letters)
>mm_chr11_57784714_57785682
Length = 969
Score = 1054 bits (545), Expect = 0.0
Identities = 563/569 (98%)
Strand = Plus / Plus
Query: 1 agagataggactgcctctgcctctcaaatgctaggatgaaaggcgtgcaccaccacgctg 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 agagataggactgcctctgcctctcaaatgctaggatgaaaggcgtgcgccaccacgctg 260
Query: 61 ggctcagcctcccttggttaatacatagggaaaggattctgagaggtgactggatttgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctcagcctcccttggttaatacatagggaaaggattctgagaggtgactggatttgta 320
Query: 121 cagggctccctccttccctccttcatctttgtgctagggagagaccctgaagcccagagc 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagggctccctccttcccttcttcatctttgtgctagggagagaccctgaagcccagagc 380
Query: 181 tcacttaaaccaccagcccagagccccagttatatggccacagcttcacacccctcccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacttaaaccaccagcccagagccccagttatatggccacagcttcacacccctcccac 440
Query: 241 tcaccacacaaaccgccagggaccaggtacagagatccattggtagagtgcttgaccagc 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 tcaccacacaaaccgccagggaccaggtacagagatccattggtagtgtgcttgaccagc 500
Query: 301 aatagagaagccctgaagtgagttgcaaggcctcacagtcagtgaggggatggggtttgt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 aatagagaagccctgaagtgagttgcaaggcctcacagtcagtgaggggatgtggtttgt 560
Query: 361 atcagaagaccaagacagggggatcaggtcgatatccatattctgccatataccatttgc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 atcagaagaccaagacagggggatcaggtcgatatccatattctgccatataccgtttgc 620
Query: 421 cttcctccttagtgtcctggaaaaggccccttgcctcctaccactgtgttttgacttcac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttcctccttagtgtcctggaaaaggccccttgcctcctaccactgtgttttgacttcac 680
Query: 481 tgtatttgtgtatttatttgtctgtcagaggtgcgtacatatttgggaggtgtgcatgtc 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 tgtatttgtgtatttatttgtctgtcagaggtgcgtgcatatttgggaggtgtgcatgtc 740
Query: 541 cgagtgcagggctctaggctagcctcagg 569
|||||||||||||||||||||||||||||
Sbjct: 741 cgagtgcagggctctaggctagcctcagg 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
