BAC Information

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BAC

Clone NameMSMg01-503F15
Chromosome11 (Build37)
Map Location 61,356,468 - 61,357,072
singlet/doubletsinglet
Overlap geneEpn2
Upstream geneAlkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9
Downstream geneGrap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503F15.T7 (MSMg01no503_f15.b1)MSMg01-503F15.TJ (MSMg01no503_f15.g1)
ACCAG578488AG578489
length710723
length of high quality
(start - end)
606 (82 - 687)582 (89 - 670)
definitionCHROMAT_FILE: MSMg01no503_f15.b1 PHD_FILE: MSMg01no503_f15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:36 2005CHROMAT_FILE: MSMg01no503_f15.g1 PHD_FILE: MSMg01no503_f15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTCCCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGA
AGACCGCGGAATTCAATGGGTTTCCAAAAAATGGGGCTTCTCTTTTGCCT
AATTAATAATGCATCCTGGTCAGAGCTACACTGTTGCAGGTTAAACTGGA
AACAGATTTTCACTGTTGCTCACAAGAAAATAGTCTCAGTCTAATCTCCC
TTTGGTCATAAATGGGTTCTCACTGGAGAAGAAAGCTCTCTTCTACTTTT
GTCCAAGGGGCACCAACAGCAAGCCTTTGTGTAATTTCCCTGATAAGGTA
GCCAACCTCTATTGAGCCCTGTATATCTTATCTCACTCATTCATGCCTCA
CTAATATTACAACCTGCTTAACTTGAGTATTTCTGTGATCATTATATTTA
GATCTGGGATATTTTCCTTTGTGTCCTGTCTTCTAAGAGTTTGTATGGGC
TTTTGGCTTTACTGTTTGGAAAGGTAAGAAAGACCAGCTTTACACAGTTA
CTGATGTCAGGGTTAGAACTGTTTGGAAGGGTTTCCCAGTGACATGGAAG
TTGCATACCCATTATTTTGCTACCACTTACTTAGGATCTGTTCTCAGGTT
CTCCTAGAGCTTCATGGAGTTCTTCTCCTTTTCCTCTGTCCTAGGCTTTG
ACTCAAGTGAGTTGTTTGAGATGGGTAACAACTAGGTCCCCAGACCCTGC
TTGGACTTGT
CCTTTTTTTTTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATGAAACTGT
GAATGAAATTCACGAGCCAGTTCTACAGGTGTTTGAATCAAAAAGGCAGA
AGCAGCTCTAGCAGCTTTATCAACCAAATCATCGCCCTCTGCTAAAGGGC
CAGGCAAACCTATATGAGCTCGAATGTGTTGGACAAAAAATGGAGAACTT
CTATTTAAAATTAAGGATTGCAATTTATTTAACAAATCCCCTATAGTGGA
TCAAAAATTCACCTTCCCCACCACTTCCAGTACTGCTAACAAATTAACCA
CATACTGACTGTCTGAAATTAAATTAAACGATTCAGAATACAATTCAAAA
ACTTTTATAACAATGTGCAACTCAATAACTTGGGGAGAAGCAGGGGCAAA
CTGTAAAGTTACTGGCATGGAGCCATGGAACTAATATGCTCCGCAGCCTG
TCTTAGACCCATCTGTAAAAATTAAAGGGGCATCAGGCAATGGCACTCGA
GAAGTAATTCGTGGAAAAACAACTGGATGAGTTTTAATCAGCTGCAAAAT
GGGATCCTTAGGGAAATGATTATCCATCTTCCCCATAAAGCTACATCTCA
AAATTGCCCAATCATCAACCGTAGCTGATAATACTTCTATTTGCTTCATA
TTATATGGAACAATCAATTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_f15.b1 MSMg01no503_f15.b1 CHROMAT_FILE:
MSMg01no503_f15.b1 PHD_FILE: MSMg01no503_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:36 2005
         (606 letters)



>mm_chr11_61356268_61357272
          Length = 1005

 Score = 1079 bits (558), Expect = 0.0
 Identities = 594/606 (98%), Gaps = 1/606 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggggcttctcttttgcctaattaataatgcatcctggtcagagctacactgttgcaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tggggcttctcttttgcctaattaataatgcatcctggtcagagctacactgttgcaggt 746

                                                                       
Query: 61  taaactggaaacagattttcactgttgctcacaagaaaatagtctcagtctaatctccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taaactggaaacagattttcactgttgctcacaagaaaatagtctcagtctaatctccct 686

                                                                       
Query: 121 ttggtcataaatgggttctcactggagaagaaagctctcttctacttttgtccaaggggc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 685 ttggtcataaatgggttctcactggagaagaaagctctcttctacttttgcccaaggggc 626

                                                                       
Query: 181 accaacagcaagcctttgtgtaatttccctgataaggtagccaacctctattgagccctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 accaacagcaagcctttgtgtaatttccctgataaggtagccaacctctattgagccctg 566

                                                                       
Query: 241 tatatcttatctcactcattcatgcctcactaatattacaacctgcttaacttgagtatt 300
            | | |  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaga-cagatctcactcattcatgcctcactaatattacaacctgcttaacttgagtatt 507

                                                                       
Query: 301 tctgtgatcattatatttagatctgggatattttcctttgtgtcctgtcttctaagagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tctgtgatcattatatttagatctgggatattttcctttgtgtcctgtcttctaagagtt 447

                                                                       
Query: 361 tgtatgggcttttggctttactgtttggaaaggtaagaaagaccagctttacacagttac 420
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 446 tgtatgggcttttggctttactgtttggaaaggtaaggaagaccagctttacacagttac 387

                                                                       
Query: 421 tgatgtcagggttagaactgtttggaagggtttcccagtgacatggaagttgcataccca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgatgtcagggttagaactgtttggaagggtttcccagtgacatggaagttgcataccca 327

                                                                       
Query: 481 ttattttgctaccacttacttaggatctgttctcaggttctcctagagcttcatggagtt 540
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 326 ttattttgctaccacttgcttaggatctgttctcaggttctcctagagcttcatggagct 267

                                                                       
Query: 541 cttctccttttcctctgtcctaggctttgactcaagtgagttgtttgagatgggtaacaa 600
           |||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||
Sbjct: 266 cttctccttttcctctgtcctaggcagtgactcaggtgagttgtttgagatgggtaacaa 207

                 
Query: 601 ctaggt 606
           ||||||
Sbjct: 206 ctaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1005
Length adjustment: 10
Effective length of query: 596
Effective length of database: 995
Effective search space:   593020
Effective search space used:   593020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)