BAC Information

Click to search

BAC

Clone NameMSMg01-503I10
Chromosome11 (Build37)
Map Location 104,115,319 - 104,254,887
singlet/doubletdoublet
Overlap geneMapt, 1700081L11Rik
Upstream geneMap3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik
Downstream geneCdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503I10.T7 (MSMg01no503_i10.b1)MSMg01-503I10.TJ (MSMg01no503_i10.g1)
ACCAG578622AG578623
length714717
length of high quality
(start - end)
574 (85 - 658)583 (86 - 668)
definitionCHROMAT_FILE: MSMg01no503_i10.b1 PHD_FILE: MSMg01no503_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:49 2005CHROMAT_FILE: MSMg01no503_i10.g1 PHD_FILE: MSMg01no503_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,254,314 - 104,254,887)(104,115,319 - 104,115,899)
sequence
CTTTCTTTTTCNTTCCATAATTGCGGCGCTAATACGAATATTATATTTCC
AGATCCGCGGAATTCTTTCTATTCTCCACACAAGGCTAGGCAGCTGGAGC
GTCTCAGCATTCCTAGGTGTCTTGAGCTATGTGTATCAATCACCAATGGT
CCCTATAAAAAGTTCCTTTAATTGTGGTGGTTTACTGAACTAATCTTCCT
GTGTATAAGACTGGTCTGAAACTCGAGTTCCCAAGTACTGGAACTACAGC
CATGTGGCACTATGCCAGGCTTTGACTTTGCATTCATGCCTTTCTTTGTG
AAGATTGAATTTGGGTCAGTTGGAATATTCCTGAAGTACAATGACCATAC
ATGAAATAAAAGTTTTATTGGAAAAAAAAATTAACGTTGAGATGGCAAAA
ATGGTTCATCGTGTAAAACGCTTGGTGTTGCAGTCCTCACAGCTTGAGGA
TCTATTTAGGTCGATATCTGTCTATCTCATTTCCTGGAACTTGATTTGTA
GATCACGCTGGCCTCAAACTCCCAGAGATCCACCTACCTTTGCCTCCTGA
GTGCAAGGATTAAAGGTGTGTACCACCAAGCCCAGCTCTGTTTTATTTTA
TTTGGAGACAGAATCCTTTTATGGAACCCTGGTTGGCTCTTGAACTTGCT
GTGTAGACCAGACTGACCTCAAATTCACAAAGGTAACCTGTGTTCCCTGG
ATCCTGTAGTAAAA
TTTTTTTTTCACTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCCGAAATACCAAGACAGCTAGGGCT
ACCAAGTAGAGAGAGTCTGTCTCAAAACAACAACAAAATAGCTTAGAAGC
ATGGCATACATGGGTATGTACATGTGTCTGTGTAAAACATGTTTACAACA
TAAGACATAGTTGAACCCGGGAACCAAATGTTCTTGTAGACCCACAGATG
GACGGGATAGGTGAGCAAGGAGAAATGGGTTAGTGAGTTTAAGTCCCTAC
CTTAACATAGATGGGAACGAACGATCTATTTTGCCCAGTGGGGAACTGCA
TGTCATGTGACAACATAGATGGAACTATCTGATTTATAATCCCAAATCCT
TTTTATGTCAAAAATAGCCCCACTGCTATTTTTTCCTCTTGGTGCTTTCA
CATAGATGACTTCGTTGCGTGCCCCTCCAAGCCGCTCCAGAGCCGGTGGC
ACTTCCTGTTTGGAAGGGGAGGAAATGGGTGCTGCCTGTCTCCATCACTC
TACCTTCCTGGGTGCAGATGCCACACCCTGCCCCTGCACAGTCCTCCCCC
AGGCAGCTCATCATGGTGAGTGGGACTCCTTCAGAATCCCTGCCTGCTCA
CATCACCCCTGCTTCCGCTGAAGGACTCAGAGAACATACTGGAGACCCTG
CTGAGTTAAAGGGGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_i10.b1 MSMg01no503_i10.b1 CHROMAT_FILE:
MSMg01no503_i10.b1 PHD_FILE: MSMg01no503_i10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:49 2005
         (574 letters)



>mm_chr11_104254291_104255264
          Length = 974

 Score = 1094 bits (566), Expect = 0.0
 Identities = 572/574 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctaggcagctggagcgtctcagcattcctaggtgtcttgagctatgtgtatcaatcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gctaggcagctggagcgtctcagcattcctaggtgtcttgagctatgtgtatcaatcacc 538

                                                                       
Query: 61  aatggtccctataaaaagttcctttaattgtggtggtttactgaactaatcttcctgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aatggtccctataaaaagttcctttaattgtggtggtttactgaactaatcttcctgtgt 478

                                                                       
Query: 121 ataagactggtctgaaactcgagttcccaagtactggaactacagccatgtggcactatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ataagactggtctgaaactcgagttcccaagtactggaactacagccatgtggcactatg 418

                                                                       
Query: 181 ccaggctttgactttgcattcatgcctttctttgtgaagattgaatttgggtcagttgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ccaggctttgactttgcattcatgcctttctttgtgaagattgaatttgggtcagttgga 358

                                                                       
Query: 241 atattcctgaagtacaatgaccatacatgaaataaaagttttattggaaaaaaaaattaa 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 atatgcctgaagtacaatgaccatacatgaaataaaagttttattggaaaaaaaaattaa 298

                                                                       
Query: 301 cgttgagatggcaaaaatggttcatcgtgtaaaacgcttggtgttgcagtcctcacagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 cgttgagatggcaaaaatggttcatcgtgtaaaacgcttggtgttgcagtcctcacagct 238

                                                                       
Query: 361 tgaggatctatttaggtcgatatctgtctatctcatttcctggaacttgatttgtagatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tgaggatctatttaggtcgatatctgtctatctcatttcctggaacttgatttgtagatc 178

                                                                       
Query: 421 acgctggcctcaaactcccagagatccacctacctttgcctcctgagtgcaaggattaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 acgctggcctcaaactcccagagatccacctacctttgcctcctgagtgcaaggattaaa 118

                                                                       
Query: 481 ggtgtgtaccaccaagcccagctctgttttattttatttggagacagaatccttttatgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 ggtgtgtaccaccaagcccagctctgttttattttatttggagacagaatccttttatgg 58

                                             
Query: 541 aaccctggttggctcttgaacttgctgtgtagac 574
           |||||||| |||||||||||||||||||||||||
Sbjct: 57  aaccctggctggctcttgaacttgctgtgtagac 24


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no503_i10.g1 MSMg01no503_i10.g1 CHROMAT_FILE:
MSMg01no503_i10.g1 PHD_FILE: MSMg01no503_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:49 2005
         (583 letters)



>mm_chr11_104115119_104116101
          Length = 983

 Score = 1031 bits (533), Expect = 0.0
 Identities = 569/581 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagacagctagggctaccaagtagagagagtctgtctcaaaacaacaacaaaatagctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagacagctagggctaccaagtagagagagtctgtctcaaaacaacaacaaaatagctta 260

                                                                       
Query: 61  gaagcatggcatacatgggtatgtacatgtgtctgtgtaaaacatgtttacaacataaga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 gaagcatggcatacatgggtatgtacatgtgtctgtgtaaaacatgtttataacataaga 320

                                                                       
Query: 121 catagttgaacccgggaaccaaatgttcttgtagacccacagatggacgggataggtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catagttgaacccgggaaccaaatgttcttgtagacccacagatggacgggataggtgag 380

                                                                       
Query: 181 caaggagaaatgggttagtgagtttaagtccctaccttaacatagatgggaacgaacgat 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaggagaaatgggttagtgtgtttaagtccctaccttaacatagatgggaacgaacgat 440

                                                                       
Query: 241 ctattttgcccagtggggaactgcatgtcatgtgacaacatagatggaactatctgattt 300
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctacactgcccagtggggaactgcatgtcatgtgacaacatagatggaactatctgattt 500

                                                                       
Query: 301 ataatcccaaatcctttttatgtcaaaaatagccccactgctattttttcctcttggtgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataatcccaaatcctttttatgtcaaaaatagccccactgctattttttcctcttggtgc 560

                                                                       
Query: 361 tttcacatagatgacttcgttgcgtgcccctccaagccgctccagagccggtggcacttc 420
           |||||||||||||||||| ||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 561 tttcacatagatgacttcattgcgtgcccctccaggccgttccagagccagtggcacttc 620

                                                                       
Query: 421 ctgtttggaaggggaggaaatgggtgctgcctgtctccatcactctaccttcctgggtgc 480
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 621 ctgtttggaaggggaggaaatgggtgctgcctgtctccatctccctaccttcctgggtgc 680

                                                                       
Query: 481 agatgccacaccctgcccctgcacagtcctcccccaggcagctcatcatggtgagtggga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 agatgccacaccctgcccctgcacagtcctcccccaggcagctcatcatggtgagcggga 740

                                                    
Query: 541 ctccttcagaatccctgcctgctcacatcacccctgcttcc 581
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctccttcagaatccctgcctgctcacatcacccctgcttcc 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)