Query= MSMg01no503_j02.b1 MSMg01no503_j02.b1 CHROMAT_FILE:
MSMg01no503_j02.b1 PHD_FILE: MSMg01no503_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:53 2005
(644 letters)
>mm_chr11_120532369_120533414
Length = 1046
Score = 1187 bits (614), Expect = 0.0
Identities = 639/648 (98%), Gaps = 5/648 (0%)
Strand = Plus / Plus
Query: 1 cattaatttactatatatgatttttttt-aaagagagatgtttctttttctcttttttat 59
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 200 cattaatttaatatatatgatttttttttaaagagagatgtttctttttctcttttttat 259
Query: 60 ttattttttattttttttattttttggtttttgacacagggtttctctgtgtagccctgg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttattttttattttttttattttttggtttttgacacagggtttctctgtgtagccctgg 319
Query: 120 ctgtcctggaactcactctgtagaccaggctggcctcaaactcagaaatctgcctgcctc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctgtcctggaactcactctgtagaccaggctggcctcaaactcagaaatctgcctgcctc 379
Query: 180 tgcctctggagtgctgggattaaagtcgtgggccaccactgcccagaaccactaccaaga 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgccgctggagtgctgggattaaagtcgtgggccaccactgcccagaaccactaccaaga 439
Query: 240 gatagcaccacccacaatgggctgagccctcccacatcaatcactaattaagaaaaatgc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gatagcaccacccacaatgggctgagccctcccacatcaatcactaattaagaaaaatgc 499
Query: 300 cccacagccagatcttgtggagttattttctcatttgaggtttccttctttccgatgact 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cccacagccagatcttgtggagttattttctcatttgaggtttccttctttccgatgact 559
Query: 360 ctagcttgtgtcaagttgacataaaactagcccggacaactgtcaaggaaataaataaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctagcttgtgtcaagttgacataaaactagcccggacaactgtcaaggaaataaataaaa 619
Query: 420 aaaactcattcatcaattggtgttaaaactgttgcataataaatgtgggaagaaaaaaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaaactcattcatcaattggtgttaaaactgttgcataataaatgtgggaagaaaaaaaa 679
Query: 480 aaa--catggcattgtagtcttaaagaattagcctacagctgactaatttactacccaag 537
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 680 aaaaacatggcattgtagtcttaaagaattagcctatagctgactaatttactacccaag 739
Query: 538 gaaagagggaccttgattatggaggattccgactttaacttgagcctgtac-atggtcaa 596
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 740 gaaagagggaccttgattatggaggattccgactttaacttgagcctg-accatggtcaa 798
Query: 597 attttacatgctcactttcagaacaatctgtatctcttgatggctgtc 644
|||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 atttcacatgctcactttcagaacaatctgtatctcttgatggctgtc 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1046
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1036
Effective search space: 656824
Effective search space used: 656824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_j02.g1 MSMg01no503_j02.g1 CHROMAT_FILE:
MSMg01no503_j02.g1 PHD_FILE: MSMg01no503_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:53 2005
(588 letters)
>mm_chr11_120682478_120683465
Length = 988
Score = 1094 bits (566), Expect = 0.0
Identities = 581/586 (99%)
Strand = Plus / Minus
Query: 1 ctaccctttttagaacatactgtaatgagggctggggacatagttcagtggtagcgcaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 ctaccctttttagaacatactgtaatgagggctggggacatagttcagtggtagcgcaac 836
Query: 61 ttgtctagtgtgtgcaagaacctggacttcattcccggtactgttaaaaggaaaaggaga 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 835 ttgtctagtgtgtgcaagaacctggacttcattcctggtactgttaaaaggaaaaggaga 776
Query: 121 tgcaacaataatatctttttggctcttgagacatcaagggctcagagacaggcctggcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tgcaacaataatatctttttggctcttgagacatcaagggctcagagacaggcctggcat 716
Query: 181 gggtctctctagctatgtccccaatcctgatacagggccggtggctcaggaggcgggggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gggtctctctagctatgtccccaatcctgatacagggccggtggctcaggaggcgggggc 656
Query: 241 cctgatcagggcacagtttcacaaccgcacactagaagtgtcccaggcgcgccctgttac 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 cctgagcagggcacagtttcacaaccgcacactagaagtgtcccaggcgcgccctgttac 596
Query: 301 cctagtttcctcactccccaatgtctggttgttcttgggctgagggcggggcttacagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 cctagtttcctcactccccaatgtctggttgttcttgggctgagggcggggcttacagca 536
Query: 361 ggtagctctgcaggggctcagcctcgagctttggcaacaaccctgtcccactggctgtct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ggtagctctgcaggggctcagcctcgagctttggcaacaaccctgtcccactggctgtct 476
Query: 421 cttattctggatcctactgcttgggacatggatgtgcccccagagatagaaggccctaca 480
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 475 cttattctggatcctactgcttgggacatggatgtgcccccagggatagaaggccctata 416
Query: 481 gtgggcagcgagtgtgggttggtatggcgggggtgcgcttcaggttgggagatgttaatt 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 415 gtgggcagcgagtgtgggttggtatggtgggggtgcgcttcaggttgggagatgttaatt 356
Query: 541 agccctatacttgatagacagcttgatgcacaactgccctggggta 586
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 agccctatacttgatagacagcttgatgcacaactgccctggggta 310
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
