BAC Information

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BAC

Clone NameMSMg01-504L10
Chromosome11 (Build37)
Map Location 97,921,799 - 97,922,183
singlet/doubletsinglet
Overlap genenone
Upstream geneOsbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2
Downstream geneFbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504L10.T7 (MSMg01no504_l10.b1)MSMg01-504L10.TJ (MSMg01no504_l10.g1)
ACCAG579526AG579527
length1,029707
length of high quality
(start - end)		---373 (35 - 407)
definitionCHROMAT_FILE: MSMg01no504_l10.b1 PHD_FILE: MSMg01no504_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:24 2005CHROMAT_FILE: MSMg01no504_l10.g1 PHD_FILE: MSMg01no504_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCCTCTCTTCATTTCCCGGTGGTTATGGGTGCCTAGATTCTTCGTATT
GTGGGGGGGGTGAGGGTGAGGATTTCTCTCATACCTCAGTGGATTGGTGG
GGCGCGCCGACTTTGCTAGATGCCGTGGCGGCGCATGGCTACCGATATAT
CCGGGCATTTTCGCTGCGGGTGTCGTGCCATTTATGTCATAGTGTGTAAC
ACGCGGCAATCGATCGGTTCTCTATTGTGCAGATTGTGGGGTTGAACTCT
AGCCACGAGCGGTCGTTGTTTCGTGTGCTCGGCTTATCCTACCTAATGAC
GCTGCCCTATTTCGTTCATAATATAGAAACTCATTAGTCACCCGCCCAAC
AATACGACTCACTACTACTAACTAGACTCGCTACGTAAGCCTGCAGTGTG
TAGACAACACACGTCAGTTTCGTCGGGTATAGAAATGTGTGGTGGGGGCG
GACTCCTGAAATTACAACAACTCATAACTCACCACACTTCTCTCACGCGG
CCCTCCCCCGCTTATCACTCCGTGTTGTTTCTCGCACTCCCCTCGCTGAG
TTTAAATGCGAGTGTGGGGCTATTTATACGTCAGGGCGGGGAAGATGGAG
TGGGGAGGGATGATCGAGACGCGGGTGGATATTTAGGGCGCTCGAAANGA
GGCGTCGCGTACTCTATGTGTCTCCGACACCATCTATGTGGACGCCACGC
CGCCTATACGCCGCTTATCTTAATCGTGGCACGTGCTGGCATCAATACAA
CTTTACAGTTTCTATGTCGGACCGCAGAGTAGACATGAGGCATATCGTGA
GTAACGAATGAGGGGGAGATTGGCGCGAAACAAGTTCTGAGTCGTGATAG
AGAGTATGGTTATATGTGGCACGAAGTCCGGAACGGTCAAGCAACCAAGA
TTAATGGCTGCATGAGATACGAAAGAGACACCGAGCGAGCGGCGCCAAAT
ATTAATTAGTGTGCCCGCGCGTATTCTGCCGCCCCCGATGCTGCGCGTTA
ATATTGTGTTGCTCTCGCACCCCGCCCCN

CAGATCTCCAAGTGTGCCCCAGGATGGCTCAGAGAGGCCTCTGTCATGAG
ATTTGTTGCCTCAAGGTCTACAGGAGAACCTTGACACAGACACCAGCCAG
CCCACTACCATTGCCTCTCCATTTGGTAGCTAGGACCTCCTTGCTTGGCC
AGCCAGCCAGCACTGCTTGGGTGTGGCTTGGTGTGAGCCCCAAGCCTCAA
GCACTGGGATGTTGTAGCCATGTCCGGAACCCTTCCCAGGGAGGCAGCCT
AGGGAGGAGTTGAAGGCAGGCCGCATCTTGGTCCCAGCATCTCTGCATCA
TGGTGCTCACACTTCTCCCCCACAGTTGGCTGGAGGCACCCTCACCTCTA
ACACACAGCCTGTCTGCACCCACACATCCTCCTCCTTCCTCTTGGTCCAC
TCGGAGTGAGGGCCCCAGCCCAGTCTGTGCCAACACCCCCTCATCAGCAC
AAGATCATTGCTTACAGTGCCTGTCACCCAAAATTTCAGCCCCTAACCNT
CTCTTGTTGTAAAGGACTCCTCTCCCTCACTAACCCCCAAACTGATGAAA
ATGGCGGTTAACCTGGGAAAACAAAGCTTTTTGGGGGGGGCCGGAAAAAA
TGGAAAAAAAAAGGTTGTGGTTTCAAAAAATCCCTCAAAAAGGGGGGTCC
CTCCCCCACCACAAGGGGAAAAGAAAAGGGAAAAGAGGCCCTGTAAAAGG
GGTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_l10.g1 MSMg01no504_l10.g1 CHROMAT_FILE:
MSMg01no504_l10.g1 PHD_FILE: MSMg01no504_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:24 2005
         (373 letters)



>mm_chr11_97921486_97922258
          Length = 773

 Score =  663 bits (343), Expect = 0.0
 Identities = 369/385 (95%), Gaps = 12/385 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcctctgtcatgagatttgttgcctcaaggtctacaggagaaccttgacacagacacc 60
           |||||||||||||||||||||||| |||| ||||||||||||| ||||||||||| ||||
Sbjct: 698 aggcctctgtcatgagatttgttggctcagggtctacaggagagccttgacacaggcacc 639

                                                                       
Query: 61  agccagcccactaccattgcctctccatttggtagctaggacctccttgcttg------- 113
           |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 638 agccagcccactaccattgcctctccatttggtagctaggacctccttgcttggccagcc 579

                                                                       
Query: 114 -----gccagccagccagcactgcttgggtgtggcttggtgtgagccccaagcctcaagc 168
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 agccagccagccagccagcactgcttgggtgtggcttggtgtgagccccaagcctcaagc 519

                                                                       
Query: 169 actgggatgttgtagccatgtccggaacccttcccagggaggcagcctagggaggagttg 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 actgggatgttgtagccatgtccggaacccttcccagggaggcagcctagggaggagttg 459

                                                                       
Query: 229 aaggcaggccgcatcttggtcccagcatctctgcatcatggtgctcacacttctccccca 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aaggcaggccgcatcttggtcccagcatctctgcatcatggtgctcacacttctccccca 399

                                                                       
Query: 289 cagttggctggaggcaccctcacctctaacacacagcctgtctgcacccacacatcctcc 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 cagttggctggaggcaccctcacctctaacacacagcctgtctgcacccacacatcctcc 339

                                    
Query: 349 tccttcctcttggtccactcggagt 373
           |||||||||||||||||||||||||
Sbjct: 338 tccttcctcttggtccactcggagt 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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