Query= MSMg01no504_m14.b1 MSMg01no504_m14.b1 CHROMAT_FILE:
MSMg01no504_m14.b1 PHD_FILE: MSMg01no504_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:30 2005
(629 letters)
>mm_chr11_16782073_16783096
Length = 1024
Score = 1129 bits (584), Expect = 0.0
Identities = 616/630 (97%), Gaps = 7/630 (1%)
Strand = Plus / Minus
Query: 1 gcgcctagtgcctttatcattttgctggctctcacatgtactctttgctaacagtgatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 gcgcctagtgcctttatcattttgctggctctcacatgtactctttgctaacagtgatga 765
Query: 61 tttacacgaatctatcttatttggatcttatagtctgctgagaaagaatagctgctattt 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 764 tttacacgaatctatcttatttgaatcttatagtctgctgagaaagaatagctgctattt 705
Query: 121 tatttccattaga-ttttcagtcgctctagtcgaacaaagttgtataaatatattcgtag 179
||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 704 tatttccattagatttttcagtcgctctagtctaacaaagttctataaatatattcgtag 645
Query: 180 aaaaagcaaatgcattcattatacccaaacataaattaaattacattcttggccttattt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 aaaaagcaaatgcattcattatacccaaacataaattaaattacattcttggccttattt 585
Query: 240 tgacagtattttaagacaccgtgagtaccatacttgtcagaatcatctttattggtcgac 299
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 584 tgacagtattttaagacaccgtgagcaccatacttgtcagaatcatctttattggtcgac 525
Query: 300 atgtactttgcaaccttatctttcttgcgtattacatttggagttaagaggaattgctga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 atgtactttgcaaccttatctttcttgcgtattacatttggagttaagaggaattgctga 465
Query: 360 gggaagccaacttcaacctgctgaggagcaaccctcttttgtatttctccagggaaaaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gggaagccaacttcaacctgctgaggagcaaccctcttttgtatttctccagggaaaaaa 405
Query: 420 aggtggcccatggcagtgctggcgacagaatggaatgtgaatgtgtaatcttaggttgtg 479
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 404 aggtggcccatggcagtgctggcgacagaatg------gaatgtgtaatgttaggttgtg 351
Query: 480 tctgtaaaacttagaatgtccttgtaaaatcatgagaaatgaaggcactgggattgcctg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tctgtaaaacttagaatgtccttgtaaaatcatgagaaatgaaggcactgggattgcctg 291
Query: 540 ggtaatgtgcttcacactgtacaaggagactgaaataaagcggttaggcaaggctttttc 599
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ggtaatgtgcttcacactgtataaggagactgaaataaagcggttaggcaaggctttttc 231
Query: 600 ctttgactctcttaatgggtcagctttgtc 629
|||||||||||||||||| |||||||||||
Sbjct: 230 ctttgactctcttaatggttcagctttgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1024
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1014
Effective search space: 627666
Effective search space used: 627666
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_m14.g1 MSMg01no504_m14.g1 CHROMAT_FILE:
MSMg01no504_m14.g1 PHD_FILE: MSMg01no504_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:30 2005
(474 letters)
>mm_chr11_16602953_16603826
Length = 874
Score = 878 bits (454), Expect = 0.0
Identities = 469/474 (98%)
Strand = Plus / Plus
Query: 1 aaagaacaattctaagtaagttcaaagatttcagagaaaatatgagtagattacatagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagaacaattctaagtaagttcaaagatttcagagaaaatatgagtagattacatagtg 260
Query: 61 aatttaagaatgataggaatatgctcgtcagtggattccaagagaacacaataattttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttaagaatgataggaatatgctcgtcagtggattccaagagaacacaataattttga 320
Query: 121 gtcaattcaggaaacattagaattcaataaaatagtaggaatgctgaagagaagtgaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcaattcaggaaacattagaattcaataaaatagtaggaatgctgaagagaagtgaaac 380
Query: 181 attaattaaacttgggatagaaatttcagctatgcaaatagagaagctcagtagaaagct 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaattaaacttcggatagaaatttcagctatgcaaatagagaagctcagtagaaagct 440
Query: 241 ttactaataggcaggtcatgaggaagacaaacatcagcgcttgaggacaaggtttagaga 300
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 ttactaagaggcaggtcatgaggaagacaaacatcagcgcttgaggacaaggttgagaga 500
Query: 301 ctgagttattcaatcaaacaaacaaactcaaaaactgagtgaagactatgtgtaaggtct 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 ctgagttattcaatcaaacaaacaaactcaaaaactgagtgaatactatgtgtaaggtct 560
Query: 361 ttgggacatcacaaagagattgagtttatgaactgaattacaggcatagaagaatgaaaa 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 ttgggacatcacaaagagattgagtttatgaactgaattacaggcatagaagaaggaaaa 620
Query: 421 tttgtctcaatacccaagaaattatttccaatataatcagataaaaaaaagttg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgtctcaatacccaagaaattatttccaatataatcagataaaaaaaagttg 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
