BAC Information

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BAC

Clone NameMSMg01-504O06
Chromosome11 (Build37)
Map Location 93,201,270 - 93,201,832
singlet/doubletsinglet
Overlap geneCar10
Upstream geneLOC382545, LOC100039286
Downstream geneLOC629636, Utp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504O06.T7 (MSMg01no504_o06.b1)MSMg01-504O06.TJ (MSMg01no504_o06.g1)
ACCAG579660AG579661
length1,391752
length of high quality
(start - end)
---563 (80 - 642)
definitionCHROMAT_FILE: MSMg01no504_o06.b1 PHD_FILE: MSMg01no504_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:39 2005CHROMAT_FILE: MSMg01no504_o06.g1 PHD_FILE: MSMg01no504_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGCGGCGCGGAATTCGATGAGTACAATACTCCCGCGCGTCCGTACGGCT
TTCTCTCTTTTCTACGTTNTTTCTATATTTTATTTCATCTTCTTCTTCAC
GGATAAGTGCCGCGGGCGGTGTGGGGTCTTTTTCGCAGCCCGCTTCCTCC
GCTCTGTTTACTGTCGTCCAGCCCTCCTCTTACTCTGTGCTACTCTACCT
GCTATTATCTCTGTGTACGTGTTGTGTTTGTGATTCCGTGCCGGCGCCGG
CAGTGCTCCCGGGCGGGATCGCGCCCATCCCTTCCTCTCGGCGCGAGACA
CATGGTTGATGTTCGTGTGATCTGCGCTTCGGGCGCGCCTCGCTTCGTCG
GCGACGGCCGGCTCACACGCGGCGCGGCTGCGTGTCGAGCGAGGTCGCGC
ATGGTGCTGNGATCTATATATTCATATTAGGCGCGCGCACGCGCCGCCTG
TTGGCGTGGTGTCTTCGGCATCCTCCCCGCGTGTGTTGTGTTCTGCGCAC
CTCTCGTGTCGTATCGTTCGACGTTTCGAGCTGTAGTACTATAGTATCTA
CTGCCAGGGGACTCGGTGGTCGCGCGGTACACTTTCGTATCGTTTCGTTA
TGCGTCACAGCGTCGTGTCGCGTACCGCGACTAACTGCACTCTACAGAGG
GCGTCGACAGAGCGTGCGGGCTGCTGTAGCTTGTACCTTACTTCCGCCTA
CCGCACCCGCCATCTATATCCTACACCGCTCGCTCATAGATATACGTGTG
TCTATACTCGCCTCGTGTGACTCGTATGTGATTGAGGCATCGCATCTATT
CCTCATCCATATACGAACTAACCAGTCGACGCGAACGGTATANACACATC
TNAGTATCATATTCACGCAATATTATCTACTATATACGCTANACATAGCT
AACTCTGCATGGCTATGACATACATGACACGGACGAACGCTGATCGTGGC
GATTATACGTATAGAGATACGCGATACGGATCGCGCGTCGTGCTGATGTG
GTGCGTGGTCGCGCGCGCGTCGTGCTCTCTGTTATATCCCGTCACTATCT
CACGCGTCAGCACACACCTCTCATCACACTTCGCTGATATCAATCACACG
ATTCATTCGTCGTAATGTTATACGCATTCCCCACNCTACTTCTACCTGCA
TAATACTATCGTCCTATCTGTGCGCGTCTCGGATATGCTCCTATTCCCTA
CGATGTTCGCACTCGAGCGCGGCGGCGACGCCTNTGATTGATNACGTCAC
GTACCTACGCTCTCGCTATTCTCACGCCACCCTGTCACGTCGCCGATCTA
CGCATAGCTAATTATCTCCATATCACCGCCACCTTCCACGCACTCGCCTG
CGGCCTGCTGTCATTGATAGTTCACACGTTCTCGTGTGCGN
AGTAAGCAATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCATAAACAAATGCACTA
TTTTAATGTTGTATGGAGATCTGTGGGGTAACTGGACTGTACTTCACCCA
GTCATTGTGAAGACATTTTTAATTATTCTTCGCAAGTCACCACACTCTCA
ATATCCTTTCGCTGCAAATGCCTTGATATAGTATTGATAGTTGAATGGAT
ATACATTTTGAAGTTCTTGATAAATACAGCCGATTTTTCCTACATAAATC
TAAGGCTGATCAAATGCCATTCTTGAAAATGTAGAGATATTCATTTCTCC
ACAACCCAGATAAACTAGTCACTGGCAGACTGAAAGGTTGTTTTCTAGGC
GATTAGACAAAAAACATATTTTGATTTGATTTGCACTTCTCCATCCCCTG
GGGGGCAGTTGTGGCCGTGCTGATTGCTCTTTTCTTCCAGGATGAATGGT
CCATTTGTATCCTGCACTTATTTCTACTTGTGCCTATTCATTTTTCTATC
TGCAATTGGCATGATCTCTATATGTGATTGGTACCTAATCTTTACTAAAT
TGACTACAACTGTTTACCAGTCTATGACTTTCATTGTGTCAAAAGTTCTC
AGTTTTTGCTACTCCATAATACCTGCTCATAAATATCTCCTAGGCATATA
CATGTTCTCAGTAAGGATACAATAAATTTAACTTCTTAGCTCCTCTGCTC
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_o06.g1 MSMg01no504_o06.g1 CHROMAT_FILE:
MSMg01no504_o06.g1 PHD_FILE: MSMg01no504_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:39 2005
         (563 letters)



>mm_chr11_93201070_93202032
          Length = 963

 Score = 1042 bits (539), Expect = 0.0
 Identities = 557/563 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagcataaacaaatgcactattttaatgttgtatggagatctgtggggtaactggactg 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 tcagcataaacaaatgcactattttaatgctgtatggagatctgtggggtaactggactg 260

                                                                       
Query: 61  tacttcacccagtcattgtgaagacatttttaattattcttcgcaagtcaccacactctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacttcacccagtcattgtgaagacatttttaattattcttcgcaagtcaccacactctc 320

                                                                       
Query: 121 aatatcctttcgctgcaaatgccttgatatagtattgatagttgaatggatatacatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatatcctttcgctgcaaatgccttgatatagtattgatagttgaatggatatacatttt 380

                                                                       
Query: 181 gaagttcttgataaatacagccgatttttcctacataaatctaaggctgatcaaatgcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagttcttgataaatacagccgatttttcctacataaatctaaggctgatcaaatgcca 440

                                                                       
Query: 241 ttcttgaaaatgtagagatattcatttctccacaacccagataaactagtcactggcaga 300
             |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccaagaaaatgtagagatattcatttctccacaacccagataaactagtcactggcaga 500

                                                                       
Query: 301 ctgaaaggttgttttctaggcgattagacaaaaaacatattttgatttgatttgcacttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgaaaggttgttttctaggcgattagacaaaaaacatattttgatttgatttgcacttc 560

                                                                       
Query: 361 tccatcccctggggggcagttgtggccgtgctgattgctcttttcttccaggatgaatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccatcccctggggggcagttgtggccgtgctgattgctcttttcttccaggatgaatgg 620

                                                                       
Query: 421 tccatttgtatcctgcacttatttctacttgtgcctattcatttttctatctgcaattgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccatttgtatcctgcacttatttctacttgtgcctattcatttttctatctgcaattgg 680

                                                                       
Query: 481 catgatctctatatgtgattggtacctaatctttactaaattgactacaactgtttacca 540
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 681 catgatctctatatgtgattggtacctaatcttgactaaattgactacaactgtttacca 740

                                  
Query: 541 gtctatgactttcattgtgtcaa 563
           |||||||||||||||||||||||
Sbjct: 741 gtctatgactttcattgtgtcaa 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)